@TOME V2.3
(Mar 2018)

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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SH21A_HUMAN: (2017-06-03 )
VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAF

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACE_B_3(1CSZ)

[Raw transfer]




NH2_B_3(1KA6)
SH21A_HUMAN
[Raw transfer]




CHAIN_B_2(1KA7)
SH21A_HUMAN
[Raw transfer]

-

CHAIN_B_2(1KA6)
SH21A_HUMAN
[Raw transfer]

-

CHAIN_B_2(1KA6)
SH21A_HUMAN
[Raw transfer]

-

CHAIN_B_2(1M27)
SH21A_HUMAN
[Raw transfer]

-

240 HHSearch 92.16100%-185 - C2 -1D4T Calc... SH21A_HUMAN
3 PsiBlast_PDB 92.16100%-185 - C2 -1D4T - SH21A_HUMAN -
6 PsiBlast_PDB 92.10100%-202 - C2 -1M27 8.2 SH21A_HUMAN
234 HHSearch 89.72100%-187 - C2 -1KA6 4.9 SH21A_HUMAN
1 PsiBlast_PDB 89.72100%-187 - C2 -1KA6 4.9 SH21A_HUMAN
4 PsiBlast_PDB 88.90100%-184 - C2 -1D4W Calc... SH21A_HUMAN
5 PsiBlast_PDB 88.05100%-200 - C2 -1D1Z Calc... SH21A_HUMAN
2 PsiBlast_PDB 86.88100%-176 - C2 -1KA7 5.9 SH21A_HUMAN
251 HHSearch 70.8341%-199 - C2 -2MK2 Calc... SHIP2_HUMAN
9 PsiBlast_PDB 69.5841%-187 - C2 -2MK2 - SHIP2_HUMAN -
241 HHSearch 68.7443%-173 - C2 -2YSX Calc... SHIP1_HUMAN
239 HHSearch 67.7039%-206 - C2 -1I3Z Calc... SH21B_MOUSE
8 PsiBlast_PDB 67.2239%-195 - C2 -1I3Z - SH21B_MOUSE -
245 HHSearch 64.9629%-195 - C2 -2GSB Calc...
243 HHSearch 64.5034%-182 - C2 -4EIH Calc...
249 HHSearch 63.7725%-153 - C2 -2CIA Calc...
7 PsiBlast_PDB 63.3845%-159 - C2 -2YSX - SHIP1_HUMAN -
247 HHSearch 61.7728%-179 - C2 -3OV1 Calc... GRB2_HUMAN
235 HHSearch 60.6728%-173 - C2 -3WA4 Calc... GRB2_HUMAN
233 HHSearch 60.6625%-108 - C2 -1JU5 Calc... CRK_HUMAN
255 Fugue 45.5532% 4 - C2 -1CSZ Error