@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SHIP2_HUMAN: (2017-06-04 )
WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLAVQTSQGVPVRRFQTLGELIGLY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_B_2(1M27)
SH21A_HUMAN
[Raw transfer]
-
CHAIN_B_2(1KA7)
SH21A_HUMAN
[Raw transfer]
-
253 HHSearch 89.75100%-212 - C1 -2MK2 - SHIP2_HUMAN -
1 PsiBlast_PDB 89.75100%-212 - C1 -2MK2 - SHIP2_HUMAN -
245 HHSearch 72.7056%-179 - C1 -2YSX - SHIP1_HUMAN -
2 PsiBlast_PDB 72.7056%-179 - C1 -2YSX - SHIP1_HUMAN -
243 HHSearch 71.4341%-198 - C1 -1KA6 - SH21A_HUMAN -
7 PsiBlast_PDB 70.6841%-200 - C1 -1M27 7.9 SH21A_HUMAN
8 PsiBlast_PDB 68.4141%-188 - C1 -1KA6 - SH21A_HUMAN -
250 HHSearch 67.9941%-194 - C1 -1D4T - SH21A_HUMAN -
5 PsiBlast_PDB 67.0341%-182 - C1 -1D4W - SH21A_HUMAN -
247 HHSearch 66.6237%-177 * C1 *3WA4 - GRB2_HUMAN -
4 PsiBlast_PDB 66.6041%-182 - C1 -1D4T - SH21A_HUMAN -
6 PsiBlast_PDB 66.2141%-193 - C1 -1D1Z - SH21A_HUMAN -
248 HHSearch 65.6141%-217 - C1 -1I3Z - SH21B_MOUSE -
3 PsiBlast_PDB 65.6141%-217 - C1 -1I3Z - SH21B_MOUSE -
9 PsiBlast_PDB 63.6341%-185 - C1 -1KA7 4.8 SH21A_HUMAN
257 HHSearch 63.1645%-165 - C1 -1OPK - ABL1_MOUSE -
143 PsiBlast_CBE 61.3235%-171 - C1 -1AYA - PTN11_MOUSE -
255 HHSearch 61.1528%-211 - C1 -2GSB - -
144 PsiBlast_CBE 61.0935%-169 - C1 -3TL0 - PTN11_HUMAN -
142 PsiBlast_CBE 59.7035%-161 - C1 -1AYA - PTN11_MOUSE -