@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SOCS7_HUMAN: (2017-06-04 )
WYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_P_2(2VIF)
KIT_HUMAN
[Raw transfer]

-

1 PsiBlast_PDB 81.3759% -57 - C5 -2VIF 6.4 KIT_HUMAN
182 HHSearch 69.8529%-108 - C5 -1K9A - CSK_RAT -
171 HHSearch 67.8043% -73 - C5 -2IZV - -
5 PsiBlast_PDB 66.3444% -60 - C5 -2IZV - -
22 PsiBlast_CBE 65.0837% -68 - C5 -4GL9 - SOCS3_MOUSE -
2 PsiBlast_PDB 65.0242% -56 - C5 -2C9W - SOCS2_HUMAN -
175 HHSearch 64.2929%-106 - C- -3EAZ - CSK_HUMAN -
6 PsiBlast_PDB 63.3637% -70 - C5 -4GL9 - SOCS3_MOUSE -
191 Fugue 62.7037% -1 - C5 -2IZV - -
4 PsiBlast_PDB 62.6642% -48 - C5 -4JGH - SOCS2_HUMAN -
170 HHSearch 61.7938% 0 - C- -2C9W - SOCS2_HUMAN -
21 PsiBlast_CBE 61.2137% -54 - C5 -4GL9 - SOCS3_MOUSE -
176 HHSearch 61.1426% -69 - C5 -2CRH - -
23 PsiBlast_CBE 60.6937% -55 - C5 -4GL9 - SOCS3_MOUSE -
173 HHSearch 60.4930% -24 - C5 -2IUG - -
180 HHSearch 59.8530% -41 - C5 -4L23 - -
10 PsiBlast_PDB 58.7535% -68 - C5 -2RVF - ? -
13 PsiBlast_PDB 58.7241% -77 - C5 -2ECD - -
183 HHSearch 58.5125%-116 - C5 -3US4 - -
51 PsiBlast_CBE 58.4735% -36 - C5 -4K45 - PLCG1_RAT -