@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0001: (2017-12-13 )
MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLPRSEMEMVWEKQLKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYDYSPKLVSIPYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAMYLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_7(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_C_9(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




ADP_B_8(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




5 PsiBlast_PDB 88.2838%-120 - C4 -1L8Q 8.5 DNAA_AQUAE
64 HHSearch 86.2838%-106 - C4 -1L8Q 8.5 DNAA_AQUAE
23 PsiBlast_CBE 86.0138%-115 - C4 -3R8F - DNAA_AQUAE -
25 PsiBlast_CBE 85.7438%-115 - C4 -3R8F - DNAA_AQUAE -
3 PsiBlast_PDB 84.8538%-115 - C4 -3R8F - DNAA_AQUAE -
24 PsiBlast_CBE 84.0038%-115 - C4 -3R8F - DNAA_AQUAE -
27 PsiBlast_CBE 83.7538%-111 - C4 -2HCB - DNAA_AQUAE -
28 PsiBlast_CBE 83.6738%-109 - C4 -2HCB - DNAA_AQUAE -
65 HHSearch 83.5838% -96 - C4 -2HCB - DNAA_AQUAE -
4 PsiBlast_PDB 83.2338%-114 - C4 -2HCB - DNAA_AQUAE -
26 PsiBlast_CBE 82.4338%-110 - C4 -2HCB - DNAA_AQUAE -
63 HHSearch 74.2532% -27 - C4 -2Z4R - DNAA_THEMA -
21 PsiBlast_CBE 73.3433% -29 - C4 -2Z4R 7.1 DNAA_THEMA
62 HHSearch 72.8832% -29 - C4 -2Z4S 6.6 DNAA_THEMA
2 PsiBlast_PDB 72.7433% -32 - C4 -2Z4S 6.6 DNAA_THEMA
22 PsiBlast_CBE 72.0333% -28 - C4 -2Z4R 8.1 DNAA_THEMA
1 PsiBlast_PDB 71.5733% -28 - C4 -2Z4R 7.3 DNAA_THEMA
66 HHSearch 64.2022% -66 - C4 -3BOS - ? -
67 HHSearch 62.0222% -68 - C4 -3BOS - ? -
9 PsiBlast_PDB 53.8424% 6 - C4 -3BOS - ? -