@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0006: (2017-12-13 )
MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGEAEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNAERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGDQISIPVEQIHLLSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDDDQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILIGTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQGYYLYNKVDTIVQKVSELQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDAYLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEIKESKEKNSI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(1GM5)
?
[Raw transfer]
36 Fugue 65.5634% 4 - C1 -2EYQ - MFD_ECOLI -
1 PsiBlast_PDB 61.3736% 24 - C1 -2EYQ - MFD_ECOLI -
21 PsiBlast_CBE 60.7136% 27 - C1 -2EYQ - MFD_ECOLI -
45 HHSearch 60.2934% 22 - C1 -2EYQ - MFD_ECOLI -
2 PsiBlast_PDB 56.6599%-167 - C3 -2QSR - ? -
59 HHSearch 56.28100%-170 - C3 -2QSR - ? -
48 HHSearch 55.9040% -61 - C1 -1GM5 - ? -
40 Fugue 51.2796%-117 * C3 *2QSR - ? -
3 PsiBlast_PDB 49.9939% -40 - C1 -1GM5 5.2 ?
38 Fugue 45.2818% -39 - C1 -3HJH - MFD_ECOLI -
10 PsiBlast_PDB 43.0029%-100 - C1 -4NL4 - ? -
47 HHSearch 42.9719% 37 - C1 -2NMV - ? -
46 HHSearch 41.7318% -3 - C1 -3HJH - MFD_ECOLI -
58 HHSearch 40.9120% -8 - C1 -1OYW - RECQ_ECOLI -
51 HHSearch 39.3916% -2 - C1 -5SUQ - SUB2_YEAST -
66 HHSearch 38.7619% -16 - C1 -4O3M - -
63 HHSearch 38.3616% 9 - C1 -5SUP - SUB2_YEAST -
61 HHSearch 38.0819% 19 - C1 -4TYN - MS116_YEAST -
53 HHSearch 37.9318% -9 - C1 -4U7D - RECQ1_HUMAN -
55 HHSearch 37.5718% 19 - C1 -3SQW - MS116_YEAST -