@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0035: (2017-12-14 )
MDLTKRFNKQLDKIQVSLIRQFDQVISEIPGVLRLTLGEPDFTTPDHVKEAAKRAIDQNQSYYTGMSGLLTLRQAASDFVKEKYQLDYAPENEILVTIGATEALSATLTAILEEGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENGFVLTPEMLEKAILEQGDKLKAVILNYPANPTGITYSREQLEALAAVLRKYEIFVVCDEVYSELTYTGEAHVSLGTMLRDQAIIINGLSKSHAMTGWRLGLIFAPATFTAQLIKSHQYLVTAANTMAQHAAVEALTAGKNDAEPMKKEYIQRRDYIIEKMTALGFEIIKPDGAFYIFAKIPAGYNQDSFAFLKDFAQKKAVAFIPGAAFGRYGEGYVRLSYAASMETIKEAMKRLEEYMREA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]




UNL_B_6(1VP4)
?
[Raw transfer]




PLP_E_5(1GDE)
?
[Raw transfer]




KMT_F_6(1V2E)
?
[Raw transfer]




KMT_E_5(1V2E)
?
[Raw transfer]




UNL_A_4(1VP4)
?
[Raw transfer]




PLP_F_6(1GDE)
?
[Raw transfer]




KYN_B_5(3E2Z)
KAT3_MOUSE
[Raw transfer]




PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]




PLP_B_4(1GD9)
?
[Raw transfer]




GLU_D_4(1GDE)
?
[Raw transfer]




PLP_B_4(1DJU)
?
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




HCI_E_5(1V2F)
?
[Raw transfer]




HCI_F_6(1V2F)
?
[Raw transfer]




PMP_B_5(3E2Y)
KAT3_MOUSE
[Raw transfer]




GLN_B_6(3E2Y)
KAT3_MOUSE
[Raw transfer]




PMP_A_4(3E2Y)
KAT3_MOUSE
[Raw transfer]




PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]




PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]




PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]




64 HHSearch 96.8877% -59 - C1 -4MY5 - ? -
63 HHSearch 73.1338% -45 * C1 *1GDE 4.9 ?
23 PsiBlast_CBE 71.9037% -29 - C1 -1GD9 3.8 ?
3 PsiBlast_PDB 71.6137% -29 - C1 -1GD9 - ? -
2 PsiBlast_PDB 71.0737% -29 - C1 -1GDE - ? -
22 PsiBlast_CBE 70.4437% -29 - C1 -1GDE 5.1 ?
17 PsiBlast_PDB 66.8629% -76 - C1 -2X5D - ? -
1 PsiBlast_PDB 65.3637% -30 - C1 -1DJU - ? -
21 PsiBlast_CBE 65.3137% -34 - C1 -1DJU 4.1 ?
14 PsiBlast_PDB 64.9733% -50 - C1 -1J32 - ? -
45 PsiBlast_CBE 64.0333% -49 - C1 -1J32 - ? -
18 PsiBlast_PDB 63.2329% -68 - C1 -1U08 - YBDL_ECOLI -
26 PsiBlast_CBE 63.0236% -37 - C1 -5BJ3 - AAT_THET8 -
24 PsiBlast_CBE 62.8936% -37 - C1 -5BJ3 - AAT_THET8 -
4 PsiBlast_PDB 62.8536% -37 - C1 -5BJ3 - AAT_THET8 -
8 PsiBlast_PDB 62.1036% -38 - C1 -1GCK - AAT_THET8 -
25 PsiBlast_CBE 62.0536% -37 - C1 -5BJ3 - AAT_THET8 -
9 PsiBlast_PDB 61.9536% -36 - C1 -1B5P - AAT_THET8 -
7 PsiBlast_PDB 61.7836% -37 - C1 -5BJ4 - AAT_THET8 -
39 PsiBlast_CBE 61.5336% -39 - C1 -1B5P 4.4 AAT_THET8
27 PsiBlast_CBE 61.2336% -37 - C1 -5BJ4 4.6 AAT_THET8
38 PsiBlast_CBE 60.2136% -37 - C1 -1GCK 2.6 AAT_THET8
40 PsiBlast_CBE 59.6036% -35 - C1 -1B5O 4.6 AAT_THET8
10 PsiBlast_PDB 59.4536% -38 - C1 -1B5O 4.1 AAT_THET8
44 PsiBlast_CBE 59.2034% -3 - C1 -1O4S 4.1 AAT_THEMA
12 PsiBlast_PDB 56.5434% 1 - C1 -1O4S 4.3 AAT_THEMA