@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0043: (2017-12-14 )
MKFGKRHYRPQVDQMDCGVASLAMVFGYYGSYYFLAHLRELAKTTMDGTTALGLVKVAEEIGFETRAIKADMTLFDLPDLTFPFVAHVLKEGKLLHYYVVTGQDKDSIHIADPDPGVKLTKLPRERFEEEWTGVTLFMAPSPDYKPHKEQKNGLLSFIPILVKQRGLIANIVLATLLVTVINIVGSYYLQSIIDTYVPDQMRSTLGIISIGLVIVYILQQILSYAQEYLLLVLGQRLSIDVILSYIKHVFHLPMSFFATRRTGEIVSRFTDANSIIDALASTILSIFLDVSTVVIISLVLFSQNTNLFFMTLLALPIYTVIIFAFMKPFEKMNRDTMEANAVLSSSIIEDINGIETIKSLTSESQRYQKIDKEFVDYLKKSFTYSRAESQQKALKKVAHLLLNVGILWMGAVLVMDGKMSLGQLITYNTLLVYFTNPLENIINLQTKLQTAQVANNRLNEVYLVASEFEEKKTVEDLSLMKGDMTFKQVHYKYGYGRDVLSDINLTVPQGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGGVNLNQIDKKALRQYINYLPQQPYVFNGTILENLLLGAKEGTTQEDILRAVELAEIREDIERMPLNYQTELTSDGAGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRIVDNLIALDKTLIFIAHRLTIAERTEKVVVLDQGKIVEEGKHADLLAQGGFYAHLVNS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(5DGX)

[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




98 HHSearch 87.8738% - - C2 -4RY2 - ? -
99 HHSearch 87.8538% - - C2 -4RY2 - ? -
1 PsiBlast_PDB 87.3838% - - C2 -4RY2 - ? -
108 HHSearch 70.2929% -54 - C2 -5MKK - ? -
2 PsiBlast_PDB 68.4538% -47 * C2 *4S0F 2.6 ?
21 PsiBlast_CBE 68.1038% -41 - C2 -4S0F 2.1 ?
92 Fugue 67.8725% -35 - C2 -4F4C - PGP1_CAEEL -
116 HHSearch 67.7527% -44 - C2 -5MKK - ? -
112 HHSearch 67.0829% -45 - C2 -3QF4 - Y288_THEMA -
12 PsiBlast_PDB 66.5630% -34 - C2 -5MKK - ? -
22 PsiBlast_CBE 63.9965%-108 - C2 -3VX4 6.4 ?
8 PsiBlast_PDB 63.9031% -6 - C2 -3QF4 - Y288_THEMA -
103 HHSearch 63.7727% -22 - C2 -4AYX - ABCBA_HUMAN -
3 PsiBlast_PDB 63.2265%-104 - C2 -3VX4 6.7 ?
102 HHSearch 62.9727% -23 - C2 -4AYT - ABCBA_HUMAN -
18 PsiBlast_PDB 62.5728% -18 - C2 -4AYX 5.9 ABCBA_HUMAN
19 PsiBlast_PDB 62.3628% -22 - C2 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 62.3631% -6 - C2 -4Q4J - Y288_THEMA -
9 PsiBlast_PDB 62.3631% -4 - C2 -4Q4A - Y288_THEMA -
10 PsiBlast_PDB 61.9631% - - C2 -4Q4H - Y288_THEMA -
27 PsiBlast_CBE 55.3539% -84 - C2 -5DGX 6.6
48 PsiBlast_CBE 47.6739% -12 - C2 -2FGJ 6.8 HLYBP_ECOLX
55 PsiBlast_CBE 47.3539% -18 - C2 -1XEF 6.6 HLYBP_ECOLX
43 PsiBlast_CBE 47.2639% -9 - C2 -2FGK 6.6 HLYBP_ECOLX
50 PsiBlast_CBE 46.1339% -10 - C2 -2FGJ 7.1 HLYBP_ECOLX
45 PsiBlast_CBE 45.8039% -9 - C2 -2FGK 7.2 HLYBP_ECOLX
40 PsiBlast_CBE 45.7039% -16 - C2 -2PMK 6.8
42 PsiBlast_CBE 45.6939% -12 - C2 -2FGK 7.3
44 PsiBlast_CBE 44.8839% -11 - C2 -2FGK 7.1 HLYBP_ECOLX
47 PsiBlast_CBE 44.3139% -8 - C2 -2FGJ 6.8