@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0045: (2017-12-14 )
MSKQLIYSGKAKDIYTTEDENLIISTYKDQATAFNGVKKEQIAGKGVLNNQISSFIFEKLNAAGVATHFVEKLSDTEQLNKKVKIIPLEVVLRNYTAGSFSKRFGVDEGIALETPIVEFYYKNDDLDDPFINDEHVKFLQIADDQQIAYLKEEARRINELLKVWFAEIGLKLIDFKLEFGFDKDGKIILADEFSPDNCRLWDADGNHMDKDVFRRGLGELTDVYEIVWEKLQELK

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_8(3NUA)
PUR7_CLOP1
[Raw transfer]




ADP_B_8(3NUA)
PUR7_CLOP1
[Raw transfer]




AIR_A_3(4FE2)
PUR7_STRPN
[Raw transfer]




AMP_A_11(4O81)
PUR7_PYRHO
[Raw transfer]




CDP_A_3(4O86)
PUR7_PYRHO
[Raw transfer]




C5P_A_2(4O7Y)
PUR7_PYRHO
[Raw transfer]




C2R_A_10(2GQS)
PUR7_ECOLI
[Raw transfer]




C2R_B_12(2GQS)
PUR7_ECOLI
[Raw transfer]




C2R_B_12(2GQS)
PUR7_ECOLI
[Raw transfer]




C2R_A_10(2GQS)
PUR7_ECOLI
[Raw transfer]




TYD_A_2(4O7S)
PUR7_PYRHO
[Raw transfer]




U5P_A_2(4O7R)
PUR7_PYRHO
[Raw transfer]




CIT_B_8(2Z02)
PUR7_METJA
[Raw transfer]




ATP_A_7(2Z02)
PUR7_METJA
[Raw transfer]




ATP_A_3(4O7W)
PUR7_PYRHO
[Raw transfer]




ADP_A_4(4FGR)
PUR7_STRPN
[Raw transfer]




EDO_A_7(3KRE)
PUR7_EHRCR
[Raw transfer]




EDO_A_7(3KRE)
PUR7_EHRCR
[Raw transfer]




ADP_A_4(4NYE)
PUR7_STRPN
[Raw transfer]




ADP_A_4(4FGR)
PUR7_STRPN
[Raw transfer]




ADP_A_3(4O7V)
PUR7_PYRHO
[Raw transfer]




ADP_B_13(2YWV)
?
[Raw transfer]




ADP_A_12(2YWV)
?
[Raw transfer]




ADP_A_4(4FE2)
PUR7_STRPN
[Raw transfer]




ADP_B_13(2YWV)
?
[Raw transfer]




ADP_B_8(4NYE)
PUR7_STRPN
[Raw transfer]




ADP_B_12(4FE2)
PUR7_STRPN
[Raw transfer]




ADP_B_8(4FGR)
PUR7_STRPN
[Raw transfer]




ADP_A_3(4O7T)
PUR7_PYRHO
[Raw transfer]




ADP_A_3(3NUA)
PUR7_CLOP1
[Raw transfer]




AMP_A_10(4O81)
PUR7_PYRHO
[Raw transfer]




EDO_A_6(3KRE)
PUR7_EHRCR
[Raw transfer]




47 HHSearch 91.6099% -64 - C2 -4FE2 7.8 PUR7_STRPN
1 PsiBlast_PDB 91.3598% -64 - C2 -4FE2 5.2 PUR7_STRPN
48 HHSearch 91.3099% -61 - C2 -4FGR 7.1 PUR7_STRPN
2 PsiBlast_PDB 91.1798% -63 - C2 -4FGR 7.1 PUR7_STRPN
3 PsiBlast_PDB 90.9598% -64 - C2 -4NYE 7.0 PUR7_STRPN
23 PsiBlast_CBE 89.6898% -63 - C2 -4FE2 6.1 PUR7_STRPN
22 PsiBlast_CBE 89.5698% -66 - C2 -4FGR 6.3 PUR7_STRPN
21 PsiBlast_CBE 89.2598% -65 - C2 -4NYE 6.2 PUR7_STRPN
24 PsiBlast_CBE 80.8858% -52 - C2 -2YWV 7.0 ?
51 HHSearch 80.5557% -46 - C2 -2YWV 7.0 ?
4 PsiBlast_PDB 80.2258% -53 - C2 -2YWV 6.8 ?
11 PsiBlast_PDB 79.1947% -82 - C2 -4O7S 6.3 PUR7_PYRHO
16 PsiBlast_PDB 77.1847% -67 - C2 -4O86 6.7 PUR7_PYRHO
14 PsiBlast_PDB 77.0147% -63 - C2 -4O7W 5.5 PUR7_PYRHO
7 PsiBlast_PDB 76.9347% -66 - C2 -3U55 - PUR7_PYRHO -
8 PsiBlast_PDB 76.5547% -59 - C2 -4O7L - PUR7_PYRHO -
18 PsiBlast_PDB 76.0744% -55 - C2 -2YZL - PUR7_METJA -
15 PsiBlast_PDB 76.0647% -68 - C2 -4O7Y 5.6 PUR7_PYRHO
9 PsiBlast_PDB 75.9747% -60 - C2 -4O7N - PUR7_PYRHO -
56 HHSearch 75.8245% -54 * C2 *4O7N - PUR7_PYRHO -
13 PsiBlast_PDB 75.6047% -66 - C2 -4O7V 4.5 PUR7_PYRHO
12 PsiBlast_PDB 75.5347% -67 - C2 -4O7T 5.5 PUR7_PYRHO
25 PsiBlast_CBE 73.7551% -47 - C2 -3NUA 6.4 PUR7_CLOP1
52 HHSearch 73.6652% -47 - C2 -3NUA 6.4 PUR7_CLOP1
6 PsiBlast_PDB 73.3645% -44 - C2 -3KRE 3.2 PUR7_EHRCR
20 PsiBlast_PDB 73.2647% -68 - C2 -4O81 6.5 PUR7_PYRHO
26 PsiBlast_CBE 73.0844% -57 - C2 -2Z02 3.3 PUR7_METJA
10 PsiBlast_PDB 72.9047% -62 - C2 -4O7R 5.7 PUR7_PYRHO
5 PsiBlast_PDB 72.7551% -48 - C2 -3NUA 8.3 PUR7_CLOP1
19 PsiBlast_PDB 72.2744% -54 - C2 -2Z02 6.5 PUR7_METJA
53 HHSearch 72.0246% -46 - C2 -3KRE 3.2 PUR7_EHRCR
50 HHSearch 69.3141% -33 - C2 -2GQS 5.6 PUR7_ECOLI
37 Fugue 60.5442% 61 - C2 -2GQS 5.4 PUR7_ECOLI
28 PsiBlast_CBE 59.5442% 63 - C2 -2GQS 5.4 PUR7_ECOLI
27 PsiBlast_CBE 58.6742% 63 - C2 -2GQS 5.6 PUR7_ECOLI