@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0048: (2017-12-14 )
MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSKTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNEPAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVVEGDVLLGLVSSGIHSNGYSLVRRVFADYTGEEVLPELEGKKLKEVLLEPTRIYVKAVLPLIKEELVNGIAHITGGGFIENVPRMFADDLAAEIDESKVPVLPIFKALEKYGQIKHEEMFEIFNMGVGLMLAVSPENVERVKELLDEAVYEIGRIVKKENESVIIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_5(5VK4)
?
[Raw transfer]




CIT_A_4(3P4E)
PUR5_VIBCH
[Raw transfer]




EDO_A_7(3KIZ)
?
[Raw transfer]




CIT_A_4(3P4E)
PUR5_VIBCH
[Raw transfer]




EDO_B_13(3KIZ)
?
[Raw transfer]




ANP_A_3(5VK4)
?
[Raw transfer]




ANP_A_3(5VK4)
?
[Raw transfer]




29 HHSearch 93.3453%-110 - C3 -1CLI - PUR5_ECOLI -
3 PsiBlast_PDB 92.5452%-110 - C3 -1CLI - PUR5_ECOLI -
30 HHSearch 90.6352%-115 - C3 -3P4E 2.8 PUR5_VIBCH
4 PsiBlast_PDB 89.9552%-125 - C3 -3P4E 4.2 PUR5_VIBCH
26 HHSearch 88.0747%-111 - C3 -5VK4 2.3 ?
2 PsiBlast_PDB 88.0357% -58 - C3 -2Z01 - PUR5_GEOKA -
31 HHSearch 86.4957% -47 - C3 -2Z01 - PUR5_GEOKA -
1 PsiBlast_PDB 84.6458% -51 - C3 -2BTU - PUR5_BACAN -
25 HHSearch 83.8458% -43 - C3 -2BTU - PUR5_BACAN -
24 PsiBlast_CBE 82.3747% -53 - C3 -5VK4 2.3 ?
5 PsiBlast_PDB 82.0647% -47 - C3 -5VK4 2.9 ?
6 PsiBlast_PDB 75.6439% 5 - C3 -3M84 - ? -
7 PsiBlast_PDB 75.2039% 11 - C3 -3QTY - ? -
8 PsiBlast_PDB 75.1342% -66 - C3 -5AVM - ? -
27 HHSearch 74.7643% -69 - C3 -5AVM - ? -
28 HHSearch 73.7943% -68 - C3 -5AVM - ? -
32 HHSearch 73.1940% 14 - C3 -3M84 - ? -
49 Fugue 63.9346%-139 - C3 -1CLI - PUR5_ECOLI -
43 HHSearch 57.7322% -91 - C3 -5CM7 - ? -
33 HHSearch 57.5025% 5 - C3 -3KIZ 3.2 ?