@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0049: (2017-12-14 )
MKKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQLGVLSYAFELKEFESKTDYEAALVELLEEHQIDLVCLAGYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTIDRFEARIHEAEYRLYPEVVKALFTD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GAR_D_4(1C2T)
PUR3_ECOLI
[Raw transfer]




GAR_F_6(1C2T)
PUR3_ECOLI
[Raw transfer]




THH_A_3(3DCJ)
PUR3_MYCTU
[Raw transfer]




THH_B_6(3DCJ)
PUR3_MYCTU
[Raw transfer]




GOL_A_5(3KCQ)
?
[Raw transfer]




GOL_B_13(3P9X)
?
[Raw transfer]




GOL_B_13(3P9X)
?
[Raw transfer]




125 HHSearch 99.9099%-154 - C4 -4S1N - ? -
1 PsiBlast_PDB 99.3298%-154 - C4 -4S1N - ? -
133 HHSearch 67.5135% -75 - C4 -3KCQ - ? -
138 HHSearch 64.3138% -36 - C4 -1JKX - PUR3_ECOLI -
21 PsiBlast_CBE 64.1947% 1 - C4 -3P9X 2.3 ?
127 HHSearch 64.1348% -2 - C4 -3P9X 2.3 ?
126 HHSearch 64.0648% -3 - C4 -3P9X - ? -
137 HHSearch 63.8838% -34 - C4 -1C3E - PUR3_ECOLI -
3 PsiBlast_PDB 63.6247% -0 - C4 -3P9X - ? -
23 PsiBlast_CBE 62.9937% -19 - C4 -1JKX - PUR3_ECOLI -
29 PsiBlast_CBE 62.7737% -11 - C4 -1CDE - PUR3_ECOLI -
13 PsiBlast_PDB 62.5337% -11 - C4 -1CDE - PUR3_ECOLI -
71 PsiBlast_CBE 62.3534% -32 - C4 -3KCQ - ? -
24 PsiBlast_CBE 62.1537% -20 - C4 -1JKX - PUR3_ECOLI -
12 PsiBlast_PDB 62.1037% -16 - C4 -1JKX - PUR3_ECOLI -
22 PsiBlast_CBE 62.0137% -24 - C4 -1JKX - PUR3_ECOLI -
28 PsiBlast_CBE 61.9237% -10 - C4 -1CDE - PUR3_ECOLI -
27 PsiBlast_CBE 61.8637% -11 - C4 -1CDE - PUR3_ECOLI -
31 PsiBlast_CBE 61.7937% -22 - C4 -1C2T 2.9 PUR3_ECOLI
134 HHSearch 61.3035% -12 - C4 -3KCQ - ? -