@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0077: (2017-12-15 )
MKLKSYILVGYIISTLLTILVVFWAVQKMLIAKGEIYFLLGMTIVASLVGAGISLFLLLPVFTSLGKLKEHAKRVAAKDFPSNLEVQGPVEFQQLGQTFNEMSHDLQVSFDSLEESEREKGLMIAQLSHDIKTPITSIQATVEGILDGIIKESEQAHYLATIGRQTERLNKLVEELNFLTLNTARNQVETTSKDSIFLDKLLIECMSEFQFLIEQERRDVHLQVIPESARIEGDYAKLSRILVNLVDNAFKYSAPGTKLEVVAKLEKDQLSISVTDEGQGIAPEDLENIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVSSQYGLGSTFTLVLNLSGSENKA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ANP_A_3(1ID0)

[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]



ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]
36 HHSearch 78.8527% - - C1 -4I5S - ? -
60 Fugue 70.6826% - - C1 -4I5S - ? -
7 PsiBlast_PDB 62.8329%-107 - C1 -4BIX 5.1 CPXA_ECOLI
10 PsiBlast_PDB 62.3129% -91 - C1 -4BIZ - CPXA_ECOLI -
38 HHSearch 61.2327%-106 - C1 -4BIX - CPXA_ECOLI -
12 PsiBlast_PDB 59.6829% -78 - C1 -4CB0 7.0 CPXA_ECOLI
1 PsiBlast_PDB 59.5033% - - C1 -4I5S - ? -
15 PsiBlast_PDB 58.8729% 23 - C1 -3DGE - ? -
19 PsiBlast_PDB 58.4227% - - C1 -4Q20 - DIVL_CAUCR -
37 HHSearch 58.2728% 41 - C1 -4BIV - CPXA_ECOLI -
16 PsiBlast_PDB 58.0329% 20 - C1 -4JAV - ? -
8 PsiBlast_PDB 57.2929%-111 - C1 -4BIY - CPXA_ECOLI -
18 PsiBlast_PDB 57.0729% 10 - C1 -4JAU 6.9 ?
4 PsiBlast_PDB 56.3730% -4 - C1 -4U7O 9.1 ?
17 PsiBlast_PDB 56.2829% 18 - C1 -4JAS - ? -
14 PsiBlast_PDB 56.2429% 14 - C1 -2C2A - ? -
43 HHSearch 55.8328% 37 - C1 -4U7O - ? -
59 Fugue 55.2428%-118 * C1 *1ID0 6.9
41 HHSearch 54.3428% 34 - C1 -5C93 - ? -
52 HHSearch 54.0523% -25 - C1 -5IDJ - ? -
13 PsiBlast_PDB 43.2435% -41 - C1 -3SL2 7.8