@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0125: (2017-12-15 )
MPAQNLRAVSLLANLSKKIAQSTISSISNSCLTNCSITKKKLAPSKLRSSNMAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSYIVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKLYEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQQATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTGSQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGKVNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNGDVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQMILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLYENTEREPIIIPMILTPDEE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]




U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]




C5P_B_9(5A0V)
?
[Raw transfer]




U5P_A_8(4XWT)
?
[Raw transfer]




NACID_F_4(5A0T)
?
[Raw transfer]

-

NACID_E_3(5A0V)
?
[Raw transfer]

-

NACID_E_3(5A0T)
?
[Raw transfer]

-

NACID_E_3(5A0T)
?
[Raw transfer]

-

NACID_E_3(5A0V)
?
[Raw transfer]

-

NACID_E_4(4XWW)
?
[Raw transfer]

-

NACID_D_3(4XWW)
?
[Raw transfer]

-

NACID_D_3(4XWW)
?
[Raw transfer]

-

U5P_B_12(4XWT)
?
[Raw transfer]




NACID_F_4(5A0V)
?
[Raw transfer]

-

139 HHSearch 85.8662%-122 - C2 -3ZQ4 - RNJ1_BACSU -
1 PsiBlast_PDB 85.4862%-122 - C2 -3ZQ4 - RNJ1_BACSU -
138 HHSearch 83.9562%-122 - C2 -3ZQ4 - RNJ1_BACSU -
24 PsiBlast_CBE 66.7539% 3 - C2 -4XWW 12.7 ?
143 HHSearch 66.6340% -10 - C2 -3BK2 4.8 RNJ_THET2
3 PsiBlast_PDB 66.6039% 0 - C2 -4XWW 11.4 ?
144 HHSearch 66.5439% 0 - C2 -4XWW 11.4 ?
2 PsiBlast_PDB 66.4439% 1 - C2 -4XWT 2.3 ?
25 PsiBlast_CBE 66.3439% 2 - C2 -4XWT 3.4 ?
9 PsiBlast_PDB 66.2940% -2 - C2 -3BK2 4.8 RNJ_THET2
5 PsiBlast_PDB 65.2840% -4 - C2 -3T3O - RNJ_THET2 -
8 PsiBlast_PDB 65.2040% -3 - C2 -3BK1 - RNJ_THET2 -
142 HHSearch 64.9740% -12 - C2 -3T3O - RNJ_THET2 -
4 PsiBlast_PDB 64.2340% -3 - C2 -3T3N - RNJ_THET2 -
26 PsiBlast_CBE 62.0142% -22 - C2 -5A0V 9.5 ?
27 PsiBlast_CBE 61.9542% -25 - C2 -5A0T 13.4 ?
141 HHSearch 60.9938% -25 - C2 -5A0V 12.3 ?
140 HHSearch 60.7638% -25 - C2 -5A0T 13.0 ?
7 PsiBlast_PDB 60.6042% -24 - C2 -5A0V 12.3 ?
6 PsiBlast_PDB 60.4942% -25 - C2 -5A0T 13.0 ?