@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0222: (2017-12-17 )
MSEIEIINAKKIYHDVPVIENLNITIPKGSLFTLLGASGCGKTTLLRMIAGFNSIKDGEFYFDDTKINNMEPSKRNIGLVFQNYAIFPHLTVRDNVAFGLMQKKVPKEELIQQTNKYLELMQIAQYADRKPDKLSGGQQQRVTLACALAVNPSVLLMDEPLSNLEAKLRLDMRQTIREIQHEVGITTVYVTHDQEEAMAISDQIAVMKDGVIQQIGRPKELYHKPANEFVATFIGRTNIIPANLEKRSDGAYIVFSDGYALRMPALDQVEEQAIHVSIRPEEFIKDESGDIEGTIRDSVYLGLNTDYFIETGFASKIQVSEESTFEEELQKGNRIRLRINTQKLNIFSADGSQNLIKGVNHGT

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(4YMU)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]
3 PsiBlast_PDB 83.2038% -58 - C1 -2YYZ - ? -
103 HHSearch 83.1937% -80 - C1 -4TQU - ? -
101 HHSearch 82.9039% -55 - C1 -2YYZ - ? -
115 HHSearch 82.1139% -75 - C1 -1V43 - ? -
100 HHSearch 81.7536% -69 - C1 -3RLF - MALK_ECOLI -
1 PsiBlast_PDB 80.1237% -71 - C1 -1VCI 4.3 ?
2 PsiBlast_PDB 80.0237% -75 - C1 -1V43 - ? -
99 HHSearch 79.6936% -68 - C1 -2AWN - MALK_ECOLI -
22 PsiBlast_CBE 78.7639%-104 - C1 -3RLF - MALK_ECOLI -
102 HHSearch 78.4237% - - C1 -4TQV - ? -
14 PsiBlast_PDB 78.2739%-106 - C1 -3PUX - MALK_ECOLI -
15 PsiBlast_PDB 78.1339%-109 - C1 -3RLF - MALK_ECOLI -
108 HHSearch 78.1036% -62 - C1 -2IT1 - ? -
28 PsiBlast_CBE 77.6839%-106 - C1 -2AWN - MALK_ECOLI -
21 PsiBlast_CBE 77.6839%-103 - C1 -4KI0 - MALK_ECOLI -
12 PsiBlast_PDB 77.6739%-109 - C1 -3PUV - MALK_ECOLI -
13 PsiBlast_PDB 77.6439%-106 - C1 -3PUW - MALK_ECOLI -
9 PsiBlast_PDB 77.2739%-104 - C1 -3PUY - MALK_ECOLI -
5 PsiBlast_PDB 76.7739%-109 - C1 -1Q1E - MALK_ECOLI -
23 PsiBlast_CBE 76.7639%-109 - C1 -3PUZ - MALK_ECOLI -
110 HHSearch 68.9738% 15 - C1 -2D62 3.1 ?
104 HHSearch 63.3432% -5 - C1 -3FVQ 7.6 FBPC_NEIG1
44 PsiBlast_CBE 60.9940% -24 - C1 -3FVQ 7.6 FBPC_NEIG1
45 PsiBlast_CBE 58.6440% -22 - C1 -3FVQ 7.1 FBPC_NEIG1
72 PsiBlast_CBE 51.9933% -3 - C1 -4YMV 6.0 ?
73 PsiBlast_CBE 51.5933% -4 - C1 -4YMU 5.8 ?
74 PsiBlast_CBE 50.4733% -3 - C1 -4YMU 6.0 ?