@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0234: (2017-12-18 )
MRIFASPSRYIQGENALFENAKSILDLGNYPILLCDQLVYDIVGKRFEDYLHRYGFHIVLALFNGEASDNEINRVVALAEKENCDSIIGLGGGKTIDSAKAIADLIEKPVIIAPTIASTDAPVSALSVIYTDEGAFDHYLFYSKNPDLVLVDTKVISQAPKRLLASGIADGLATWVEARAVMQANGKTMLGQQQTLAGVAIAKKCEETLFADGLQAMAACEAKVVTPALENIVEANTLLSGLGFESGGLAAAHAIHNGFTALTGDIHHLTHGEKVAYGTLVQLLLENRPKEELDKYIEFYKKIGMPTTLKEMHLDQVGYDDLIKVGKQATMEGETIHQMPFKISPSDVAQAIIAVDAYVNSK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




GOL_B_9(4MCA)
?
[Raw transfer]




GOL_A_5(4MCA)
?
[Raw transfer]




GOL_B_9(4MCA)
?
[Raw transfer]




GOL_A_4(1JQA)
GLDA_GEOSE
[Raw transfer]




GOL_B_9(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_A_8(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_B_9(1TA9)
GLD1_SCHPO
[Raw transfer]




3 PsiBlast_PDB 96.8955% -96 - C2 -1JQ5 10.0 GLDA_GEOSE
27 HHSearch 96.5155% -97 - C2 -1JQ5 10.0 GLDA_GEOSE
1 PsiBlast_PDB 96.1055%-102 - C2 -1JPU - GLDA_GEOSE -
2 PsiBlast_PDB 94.7155%-104 - C2 -1JQA 3.6 GLDA_GEOSE
4 PsiBlast_PDB 93.1147%-114 - C2 -4MCA 3.5 ?
21 PsiBlast_CBE 93.0147%-116 - C2 -4MCA 3.9 ?
5 PsiBlast_PDB 90.9048% -96 - C2 -5XN8 - ? -
23 PsiBlast_CBE 89.1948% -95 - C2 -5XN8 - ? -
50 Fugue 87.7855% -5 - C2 -1JQ5 9.7 GLDA_GEOSE
28 HHSearch 87.4746% -89 - C2 -4MCA 3.9 ?
49 Fugue 85.6155% 13 - C2 -1JQ5 10.0 GLDA_GEOSE
25 PsiBlast_CBE 81.5145% -20 - C2 -1TA9 2.4 GLD1_SCHPO
7 PsiBlast_PDB 80.9245% -21 - C2 -1TA9 2.5 GLD1_SCHPO
30 HHSearch 78.7244% -12 - C2 -1TA9 2.4 GLD1_SCHPO
8 PsiBlast_PDB 77.8240% -30 - C2 -3UHJ - ? -
6 PsiBlast_PDB 77.6147% -15 - C2 -1KQ3 3.1 GLDA_THEMA
35 HHSearch 77.3639% -45 - C2 -3UHJ - ? -
36 HHSearch 76.5839% -48 - C2 -3UHJ - ? -
29 HHSearch 75.2944% -3 - C2 -1KQ3 3.1 GLDA_THEMA
31 HHSearch 58.2321% -20 - C2 -3OX4 - ADH2_ZYMMO -