@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0243: (2017-12-18 )
MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQEFEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAAYERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVVSFDEIPVEVQEEIKAELLKWIVSGEDTIAYSSESSYAANLEMATNEYKPSNRVVAEEEVTRVATPDVKSIDEVAAFLNVPEEQTIKTLFYIADGELVAALLVGNDQLNEVKLKNHLGADFFDVASEEEVANVVQAGFGSLGPVGLPENIKIIADRKVQDVRNAVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPIIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDEEAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKKAADGIVEVKIKATGDTIEVHADNVLETLEILSKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]



ATP_B_7(2J3M)
SYP_ENTFA
[Raw transfer]
66 Fugue 92.3065% -42 - C1 -2J3L 9.5 SYP_ENTFA
47 HHSearch 91.7266% -42 - C1 -2J3L 9.3 SYP_ENTFA
46 HHSearch 90.7566% -40 - C1 -2J3M 8.0 SYP_ENTFA
1 PsiBlast_PDB 90.4060% -43 - C1 -2J3L 9.5 SYP_ENTFA
22 PsiBlast_CBE 89.7260% -43 - C1 -2J3L 9.3 SYP_ENTFA
2 PsiBlast_PDB 89.1260% -41 - C1 -2J3M 8.0 SYP_ENTFA
21 PsiBlast_CBE 88.2360% -39 - C1 -2J3M 8.9 SYP_ENTFA
45 HHSearch 75.5046% -11 * C1 *5UCM - SYP_PSEAE -
48 HHSearch 74.7340% -88 - C1 -2I4L - SYP_RHOPA -
3 PsiBlast_PDB 72.6243% -12 - C1 -5UCM - SYP_PSEAE -
49 HHSearch 68.5840% -85 - C1 -2I4N - SYP_RHOPA -
28 PsiBlast_CBE 56.3147% -82 - C1 -2I4M - SYP_RHOPA -
29 PsiBlast_CBE 54.9947% -84 - C1 -2I4M - SYP_RHOPA -
5 PsiBlast_PDB 54.5347% -88 - C1 -2I4M - SYP_RHOPA -
24 PsiBlast_CBE 53.2747% -83 - C1 -2I4O - SYP_RHOPA -
25 PsiBlast_CBE 53.0547% -79 - C1 -2I4O - SYP_RHOPA -
27 PsiBlast_CBE 52.9547% -81 - C1 -2I4N - SYP_RHOPA -
7 PsiBlast_PDB 52.8347% -85 - C1 -2I4O - SYP_RHOPA -
4 PsiBlast_PDB 52.7547% -88 - C1 -2I4L - SYP_RHOPA -
68 Fugue 52.7020% -69 - C1 -1HC7 - SYP_THET8 -