@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0245: (2017-12-18 )
MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVLDGADNHLVKAVGRIAELSAKTAGVEGTTGIGHTRWATHGKPTEDNAHPHRSETERFVLVHNGVIENYLEIKEEYLAGHHFKGQTDTEIAVHLIGKFAEEDGLSVLEAFKKALHIIRGSYAFALIDSENPDVIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETNQYMEIHDQELVIVKADSVEVQDYDGNSRERASYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLIQAYTDDAGQVVIDPAIIKAVQDADRIYILAAGTSYHAGFASKKMLEELTDTPVELGISSEWGYGMPLLSKKPLFIFISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREANYTMLLHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGNAKAQAFDLVHELSIVAQSIESTLSEKETIEAKVRELLETTRNAFYIGRGQDYYVAMEASLKLKEISYIQCEGFAAGELKHGTIALIEEGTPVLALLSDPVLANHTRGNIQEVAARGAKVLTIAEENVAKDTDDIVLTTVHPYLSPISMVVPTQLVAYFATLHRGLDVDKPRNLAKSVTVE

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]




GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]




GLP_X_2(2VF5)
GLMS_ECOLI
[Raw transfer]




AGP_A_2(2ZJ4)
GFPT1_HUMAN
[Raw transfer]




AGP_A_6(1MOS)
GLMS_ECOLI
[Raw transfer]




AGP_A_2(2ZJ4)
GFPT1_HUMAN
[Raw transfer]




G6P_A_2(1MOR)
GLMS_ECOLI
[Raw transfer]




G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]




G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]




G6Q_A_3(2J6H)
GLMS_ECOLI
[Raw transfer]




G6Q_B_4(2J6H)
GLMS_ECOLI
[Raw transfer]




BG6_B_4(2PUW)
GFA1_CANAL
[Raw transfer]




BG6_A_3(2PUW)
GFA1_CANAL
[Raw transfer]




GLP_A_2(1MOQ)
?
[Raw transfer]




3 PsiBlast_PDB 84.8040% 14 - C2 -2J6H 3.5 GLMS_ECOLI
1 PsiBlast_PDB 84.4440% 17 - C2 -4AMV - GLMS_ECOLI -
25 PsiBlast_CBE 84.1240% 17 - C2 -2J6H 4.4 GLMS_ECOLI
22 PsiBlast_CBE 83.9440% 14 - C2 -4AMV - GLMS_ECOLI -
21 PsiBlast_CBE 83.8740% 14 - C2 -4AMV - GLMS_ECOLI -
26 PsiBlast_CBE 81.9039% 18 - C2 -3OOJ - GLMS_ECOLI -
29 PsiBlast_CBE 81.8539% 16 - C2 -3OOJ - GLMS_ECOLI -
32 PsiBlast_CBE 81.6739% 20 - C2 -3OOJ - GLMS_ECOLI -
2 PsiBlast_PDB 81.1440% 11 - C2 -1JXA - GLMS_ECOLI -
27 PsiBlast_CBE 81.0139% 19 - C2 -3OOJ - GLMS_ECOLI -
31 PsiBlast_CBE 80.6939% 17 - C2 -3OOJ - GLMS_ECOLI -
6 PsiBlast_PDB 80.6739% 18 - C2 -3OOJ - GLMS_ECOLI -
28 PsiBlast_CBE 80.5739% 20 - C2 -3OOJ - GLMS_ECOLI -
30 PsiBlast_CBE 80.5139% 22 - C2 -3OOJ - GLMS_ECOLI -
24 PsiBlast_CBE 80.3140% 12 - C2 -1JXA - GLMS_ECOLI -
61 HHSearch 80.1639% -1 - C2 -1JXA - GLMS_ECOLI -
23 PsiBlast_CBE 78.2540% 18 - C2 -1JXA - GLMS_ECOLI -
7 PsiBlast_PDB 77.1957%-112 - C2 -4S1W - ? -
67 HHSearch 75.8259% -80 - C2 -4S1W - ? -
76 HHSearch 63.0440% -9 - C2 -1MOQ 4.4 GLMS_ECOLI
8 PsiBlast_PDB 61.9140% -5 - C2 -1MOS 4.4 GLMS_ECOLI
17 PsiBlast_PDB 61.8436% -0 - C2 -2ZJ3 3.5 GFPT1_HUMAN
9 PsiBlast_PDB 61.0440% -3 - C2 -1MOQ 4.4 GLMS_ECOLI
18 PsiBlast_PDB 60.9736% 2 - C2 -2ZJ4 4.5 GFPT1_HUMAN
10 PsiBlast_PDB 60.8940% -4 - C2 -1MOR 4.2 GLMS_ECOLI
5 PsiBlast_PDB 60.8640% -2 - C2 -2VF5 3.2 GLMS_ECOLI
65 HHSearch 60.2136% 9 - C2 -2ZJ3 3.5 GFPT1_HUMAN
66 HHSearch 59.9736% 8 - C2 -2ZJ4 4.5 GFPT1_HUMAN
33 PsiBlast_CBE 57.3535% -21 - C2 -2PUW 3.1 GFA1_CANAL
15 PsiBlast_PDB 57.1635% -12 - C2 -2PUW 2.8 GFA1_CANAL
57 Fugue 41.3537% -14 - C2 -1MOQ Error ?