@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0290: (2017-12-19 )
MTNTSFSIEQFSLKGKIALITGASYGIGFAIAKSYAEAGATIVFNDINQDLVNKGIEAYREVGIEAHGYVCDVTDEDGIQAMVKQIEQEVGVIDILVNNAGIIRRVPMCEMSAADFRKVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTRNIASEYGGANIQCNGIGPGYIATPQTAPLRELQEDGSRHPFDQFIIAKTPAARWGNPEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGKQPE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_11(5U9P)
?
[Raw transfer]



NAP_A_3(3O03)
?
[Raw transfer]



NAD_D_5(4ZA2)
?
[Raw transfer]



GCO_A_4(3O03)
?
[Raw transfer]



GOL_A_7(4G81)
?
[Raw transfer]



EDO_B_10(4G81)
?
[Raw transfer]



TLA_C_18(5U9P)
?
[Raw transfer]



TLA_A_6(5U9P)
?
[Raw transfer]



TLA_B_12(5U9P)
?
[Raw transfer]



TLA_D_24(5U9P)
?
[Raw transfer]



EDO_D_5(4G81)
?
[Raw transfer]



EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]



EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]
2 PsiBlast_PDB 91.0889%-124 - C1 -3O03 10.0 ?
1 PsiBlast_PDB 90.6189%-119 - C1 -3CXR - ? -
4 PsiBlast_PDB 88.6283%-128 - C1 -4U8G - ? -
3 PsiBlast_PDB 87.0888%-115 - C- -4Z9X - ? -
29 PsiBlast_CBE 77.5942%-103 - C1 -5U9P 8.1 ?
27 PsiBlast_CBE 77.3342%-107 - C1 -5U9P 3.6 ?
7 PsiBlast_PDB 75.6342%-107 - C1 -5U9P 3.7 ?
28 PsiBlast_CBE 75.4642%-104 - C1 -5U9P 3.5 ?
6 PsiBlast_PDB 72.8244%-102 - C1 -4IBO - ? -
110 PsiBlast_CBE 71.7235%-131 - C1 -4BNX - FABG_PSEAE -
77 PsiBlast_CBE 71.2135%-129 - C1 -4BO7 - FABG_PSEAE -
106 PsiBlast_CBE 70.6835%-128 - C1 -4BNY - FABG_PSEAE -
80 PsiBlast_CBE 70.6735%-138 - C1 -4BO6 - FABG_PSEAE -
109 PsiBlast_CBE 70.6635%-127 - C1 -4BNY - FABG_PSEAE -
93 PsiBlast_CBE 70.5935%-134 - C1 -4BO2 - FABG_PSEAE -
94 PsiBlast_CBE 70.4735%-136 - C1 -4BO2 - FABG_PSEAE -
30 PsiBlast_CBE 70.3641%-111 - C1 -3UF0 - ? -
117 PsiBlast_CBE 70.1335%-129 - C1 -4BNV - FABG_PSEAE -
97 PsiBlast_CBE 70.0635%-130 - C1 -4BO1 - FABG_PSEAE -
8 PsiBlast_PDB 70.0141%-113 - C1 -3UF0 - ? -
5 PsiBlast_PDB 69.8645% -70 - C1 -4G81 3.0 ?
22 PsiBlast_CBE 69.1945% -66 - C1 -4G81 2.3 ?
23 PsiBlast_CBE 68.9045% -69 - C1 -4G81 2.5 ?
53 PsiBlast_CBE 55.1735% 3 - C1 -3RRO 2.7 FABG_VIBCH
54 PsiBlast_CBE 53.4535% 5 - C1 -3RRO 1.6 FABG_VIBCH