@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0304: (2017-12-19 )
MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGTGTRFGTDLAKEAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDFTTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAETLAKWLNIELEFQGSGSTVQKQDVRANTAIKDIKKITLTLGD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDS_E_9(2Z2M)
?
[Raw transfer]



CDS_B_8(2Z2M)
?
[Raw transfer]



BMG_B_8(2ZC3)
?
[Raw transfer]



TEB_B_8(2ZC4)
?
[Raw transfer]



BMG_E_9(2ZC3)
?
[Raw transfer]



TEB_E_9(2ZC4)
?
[Raw transfer]



59F_A_3(5DF8)
?
[Raw transfer]



GOL_A_5(4YE5)
?
[Raw transfer]



OSU_C_3(1PYY)
PBPX_STRR6
[Raw transfer]
4 PsiBlast_PDB 85.13100% - - C1 -1PMD - PBPX_STRPN -
3 PsiBlast_PDB 84.2496% -48 - C1 -1RP5 - PBPX_STRPN -
2 PsiBlast_PDB 78.4499% -45 - C1 -1PYY 6.4 PBPX_STRR6
1 PsiBlast_PDB 77.25100% -42 - C1 -1QME - PBPX_STRPN -
25 Fugue 77.1699% -42 - C1 -1QME - PBPX_STRPN -
27 Fugue 76.8398% -42 - C1 -1QME - PBPX_STRPN -
36 HHSearch 68.6994% 21 - C1 -1QME - PBPX_STRPN -
26 Fugue 66.7086% -37 - C1 -1K25 - ? -
9 PsiBlast_PDB 63.7150% 32 - C1 -5U47 - ? -
35 HHSearch 61.5849% 28 - C1 -5U47 - ? -
6 PsiBlast_PDB 60.39100% -58 - C1 -2Z2M 5.7 ?
23 PsiBlast_CBE 60.15100% -58 - C1 -2ZC3 4.1 ?
5 PsiBlast_PDB 60.03100% -55 - C1 -2Z2L - ? -
24 PsiBlast_CBE 59.98100% -60 - C1 -2Z2M 4.4 ?
22 PsiBlast_CBE 59.92100% -61 - C1 -2ZC4 4.2 ?
7 PsiBlast_PDB 59.32100% -55 - C1 -2ZC3 4.3 ?
8 PsiBlast_PDB 59.25100% -55 - C1 -2ZC4 3.2 ?
38 HHSearch 52.0734% -19 - C1 -5TRO - ? -
28 Fugue 49.60100% 0 - C- -1QME - PBPX_STRPN -
10 PsiBlast_PDB 46.6934% 18 - C1 -5TRO - ? -