@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0310: (2017-12-19 )
MQEKWWHNAVVYQVYPKSFMDSNEDGVGDLPGITSKLDYLAKLGITAIWLSPVYDSPMDDNGYDIADYQAIAAIFGTMEDMDQLIAEAKKRDIRIIMDLVVNHTSDEHAWFVEACENPNSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSKKQPDLNWENEKLRQKIYEMMDFWIDKGIGGFRMDVIDMIGKIPDEKVVNNGPMLHPYLKEMNQATFGDKDLLTVGETWGATPEIAKLYSDPKGQELSMVFQFEHIGLQYQEGQPKWHYQKELNIAKLKEIFNKWQTELGVEDGWNSLFWNNHDLPRIVSIWGNDQEYREKSAKAFAILLHLMRGTPYIYQGEEIGMTNYPFETLDQVEDIESLNYAREALEKGVPIEEIMDSIRVIGRDNARTPMQWDESKNAGFSTGQPWLAVNPNYEMINVQEALANPDSIFYTYQKLVQIRKENSWLIRADFELLDTADKVFAYIRKDGDRRFLVVANLSNEEQDLTVEGNVKSVLIENTLAQEVFEKQILVPWDAFCVELL

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUC_A_4(4H8U)
?
[Raw transfer]



SUC_B_4(2PWE)
?
[Raw transfer]



ISL_A_4(4HA1)
?
[Raw transfer]



SUGAR_A_2(2ZID)
DEXB_STRMU
[Raw transfer]
-
TEU_B_6(4H8V)
?
[Raw transfer]



GLC_A_4(4H7V)
?
[Raw transfer]



GLC_B_6(4H7V)
?
[Raw transfer]



GLC_A_2(3AXI)
MALX3_YEAST
[Raw transfer]



CTS_B_6(2PWG)
?
[Raw transfer]



GLC_A_2(3A4A)
MALX3_YEAST
[Raw transfer]



GLC_A_4(4HOZ)
?
[Raw transfer]



NOJ_A_5(2PWD)
?
[Raw transfer]



NOJ_B_6(2PWD)
?
[Raw transfer]



GLC_A_2(3A4A)
MALX3_YEAST
[Raw transfer]



NOJ_A_11(3GBE)
?
[Raw transfer]



BGC_A_2(4WLC)
DEXB_STRMU
[Raw transfer]



CTS_A_5(2PWG)
?
[Raw transfer]



GOL_B_10(4GI6)
?
[Raw transfer]



GOL_A_5(4GI8)
?
[Raw transfer]



GOL_A_5(4AIE)
?
[Raw transfer]



GLC_A_4(4HP5)
?
[Raw transfer]



GOL_A_5(4AIE)
?
[Raw transfer]



GLC_B_6(4HA1)
?
[Raw transfer]



GOL_A_5(4GI9)
?
[Raw transfer]



TRS_B_6(4GO8)
?
[Raw transfer]



TRS_B_6(1ZJB)
?
[Raw transfer]



GOL_B_15(4GI8)
?
[Raw transfer]



GOL_A_5(4GIA)
?
[Raw transfer]



GOL_A_5(4GI6)
?
[Raw transfer]



GOL_B_8(4GI9)
?
[Raw transfer]



GOL_B_12(4GIA)
?
[Raw transfer]



GOL_A_3(4H2C)
?
[Raw transfer]



GOL_A_3(4GIN)
?
[Raw transfer]



TRS_A_2(4M8U)
O16G1_BACSU
[Raw transfer]



TRS_A_4(4GO8)
?
[Raw transfer]



BGC_A_8(3WY2)
?
[Raw transfer]



GOL_A_3(4HOW)
?
[Raw transfer]



TRS_A_2(4M8U)
O16G1_BACSU
[Raw transfer]



TRS_A_5(1ZJB)
?
[Raw transfer]



TRS_A_5(2ZIC)
DEXB_STRMU
[Raw transfer]



TRS_B_6(1ZJA)
?
[Raw transfer]



TRS_B_6(4GO9)
?
[Raw transfer]



GLO_A_3(4M56)
O16G1_BACSU
[Raw transfer]



TRS_A_2(4MAZ)
O16G1_BACSU
[Raw transfer]



GLO_B_7(4M56)
O16G1_BACSU
[Raw transfer]



TRS_A_2(4MB1)
O16G1_BACSU
[Raw transfer]



TRS_A_2(4MB1)
O16G1_BACSU
[Raw transfer]



TRS_A_4(4GO9)
?
[Raw transfer]



TRS_A_5(1ZJA)
?
[Raw transfer]



GOL_A_7(4H2C)
?
[Raw transfer]



TRS_A_5(1ZJA)
?
[Raw transfer]



TRS_A_2(4HOX)
?
[Raw transfer]



EDO_A_2(3GBD)
?
[Raw transfer]



EDO_A_4(3GBD)
?
[Raw transfer]



GLC_A_3(3AXH)
MALX3_YEAST
[Raw transfer]



EDO_A_13(5M99)
?
[Raw transfer]
1 PsiBlast_PDB 91.7172% -49 - C1 -2ZIC 3.5 DEXB_STRMU
3 PsiBlast_PDB 90.5072% -49 - C1 -4WLC 4.6 DEXB_STRMU
2 PsiBlast_PDB 89.7272% -46 - C1 -2ZID 6.1 DEXB_STRMU
84 HHSearch 88.8972% -48 - C1 -4XB3 - DEXB_STRMU -
4 PsiBlast_PDB 88.8972% -48 - C1 -4XB3 - DEXB_STRMU -
5 PsiBlast_PDB 74.0661% 39 - C1 -4AIE 2.7 ?
87 HHSearch 73.8561% 42 - C1 -4AIE 2.7 ?
86 HHSearch 73.5754% 26 - C1 -5DO8 - ? -
93 HHSearch 72.0754% 28 - C1 -1UOK - O16G_BACCE -
6 PsiBlast_PDB 71.6852% 30 - C1 -1UOK - O16G_BACCE -
96 HHSearch 71.5150% 23 - C1 -4M8U 3.1 O16G1_BACSU
7 PsiBlast_PDB 70.6652% 50 - C1 -5DO8 - ? -
90 HHSearch 70.4650% 23 - C1 -4MB1 3.4 O16G1_BACSU
21 PsiBlast_CBE 69.7552% 49 - C1 -5DO8 - ? -
22 PsiBlast_CBE 69.6352% 47 - C1 -5DO8 - ? -
95 HHSearch 69.5844% 31 - C1 -2PWE - ? -
12 PsiBlast_PDB 69.4046% 30 - C1 -5BRQ - ? -
29 PsiBlast_CBE 69.2246% 32 - C1 -5BRP - ? -
9 PsiBlast_PDB 68.8250% 31 - C1 -4MB1 3.4 O16G1_BACSU
17 PsiBlast_PDB 68.6044% 35 - C1 -4HP5 4.8 ?
19 PsiBlast_PDB 68.3243% 34 - C1 -3GBD 3.1 ?
15 PsiBlast_PDB 68.1944% 38 - C1 -4HOX 3.0 ?
14 PsiBlast_PDB 68.0444% 36 - C1 -4HOW 3.1 ?
94 HHSearch 67.9945% 35 - C1 -1ZJA 2.7 ?
18 PsiBlast_PDB 67.9744% 35 - C1 -4HOZ 4.0 ?
10 PsiBlast_PDB 67.8450% 31 - C1 -4M8U 3.1 O16G1_BACSU
20 PsiBlast_PDB 67.6243% 38 - C1 -3GBE 3.4 ?
11 PsiBlast_PDB 67.5550% 33 - C1 -4MAZ 2.9 O16G1_BACSU
42 PsiBlast_CBE 67.3444% 27 - C1 -4GIN 2.9 ?
54 PsiBlast_CBE 67.3144% 33 - C1 -4GI8 3.0 ?
23 PsiBlast_CBE 66.9850% 29 - C1 -4M56 2.9 O16G1_BACSU
43 PsiBlast_CBE 66.9744% 27 - C1 -4H2C 3.9 ?
57 PsiBlast_CBE 66.8844% 33 - C1 -4GI6 2.6 ?
8 PsiBlast_PDB 66.7850% 29 - C1 -4M56 2.5 O16G1_BACSU
52 PsiBlast_CBE 66.7044% 33 - C1 -4GI9 2.9 ?
51 PsiBlast_CBE 66.6344% 36 - C1 -4GIA 3.0 ?
49 PsiBlast_CBE 66.4144% 31 - C1 -4GO9 4.4 ?
30 PsiBlast_CBE 66.3744% 34 - C1 -4H8V 3.9 ?
36 PsiBlast_CBE 66.2944% 36 - C1 -1ZJA 4.4 ?
48 PsiBlast_CBE 66.1844% 32 - C1 -4GO9 3.1 ?
50 PsiBlast_CBE 66.0344% 35 - C1 -4GIA 2.9 ?
32 PsiBlast_CBE 65.9144% 35 - C1 -2PWD 4.0 ?
55 PsiBlast_CBE 65.7544% 34 - C1 -4GI8 4.2 ?
34 PsiBlast_CBE 65.6644% 33 - C1 -1ZJB 4.3 ?
68 PsiBlast_CBE 65.5943% 32 - C1 -4H7V 3.5 ?
40 PsiBlast_CBE 65.5944% 34 - C1 -2PWG 3.6 ?
41 PsiBlast_CBE 65.5444% 35 - C1 -2PWG 2.7 ?
46 PsiBlast_CBE 65.5044% 34 - C1 -4GO8 4.3 ?
47 PsiBlast_CBE 65.4144% 34 - C1 -4GO8 4.3 ?
56 PsiBlast_CBE 65.2844% 33 - C1 -4GI6 2.8 ?
33 PsiBlast_CBE 65.2644% 37 - C1 -2PWD 4.0 ?
35 PsiBlast_CBE 65.1544% 34 - C1 -1ZJB 2.9 ?
53 PsiBlast_CBE 65.0544% 35 - C1 -4GI9 2.5 ?
37 PsiBlast_CBE 65.0544% 37 - C1 -1ZJA 2.7 ?
64 PsiBlast_CBE 64.9543% 30 - C1 -4HA1 4.2 ?
69 PsiBlast_CBE 64.8243% 32 - C1 -4H7V 4.8 ?
67 PsiBlast_CBE 64.1943% 30 - C1 -4H8U 4.0 ?
92 HHSearch 60.1037% 16 - C1 -3A4A 4.0 MALX3_YEAST
73 PsiBlast_CBE 59.4536% 27 - C1 -3AXI 3.7 MALX3_YEAST
97 HHSearch 59.3734% 6 - C1 -3WY2 3.7 ?
74 PsiBlast_CBE 59.0836% 26 - C1 -3AXH 2.8 MALX3_YEAST
71 PsiBlast_CBE 59.0236% 28 - C1 -3A4A 4.0 MALX3_YEAST
103 HHSearch 54.2231% -9 - C1 -5M99 3.2 ?