@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0318: (2017-12-19 )
MKIAVAGTGYVGLSIAVLLSQQHQVMAVDIIPEKVELINQRKSPIQDDYIEKYLAKKDLNLVATLDAKEAYQDADFVVIAAPTNYDPKKNFFDTSAVESVIETALKYNPDAIMVIKSTVPVGYTESARKKFQTENILFSPEFLRESKALYDNLYPSRIILGTDKNNERLVSAAETFARLLQEGALKENIDTLYMGFTEAEAVKLFANTYLALRVSYFNELDTYSEMKGLDTQAIIDGVGLDPRIGSHYNNPSFGYGGYCLPKDTKQLLANYEDIPEELIGAIVRSNSTRKDFIADQVLKMVDYYDYSAHNIFDERVEKDIIIGIYRLTMKSNSDNFRQSSIQGIMKRIKAKGVRVVIYEPTLESGSTFFGSSVINDLEEFKRLSNAIVANRYDNSLEDVKEKVYTRDIFERD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAD_A_5(1DLI)
UDG_STRPY
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]



GOL_A_9(1DLJ)
UDG_STRPY
[Raw transfer]



GOL_A_8(1DLI)
UDG_STRPY
[Raw transfer]



UPG_A_2(3VTF)
?
[Raw transfer]



UGA_A_3(3PJG)
?
[Raw transfer]



CXS_A_2(3PJG)
?
[Raw transfer]
22 HHSearch 95.1561%-101 - C1 -3PJG 7.2 ?
1 PsiBlast_PDB 93.5057%-101 - C1 -3PJG 2.4 ?
23 HHSearch 90.6059% -47 - C1 -1DLJ 11.4 UDG_STRPY
43 Fugue 89.6858% -46 - C1 -1DLJ 11.4 UDG_STRPY
3 PsiBlast_PDB 89.2157% -47 - C1 -1DLJ 11.4 UDG_STRPY
2 PsiBlast_PDB 89.0157% -49 - C1 -1DLI 11.3 UDG_STRPY
28 HHSearch 59.0726% -1 - C1 -2O3J - UGDH_CAEEL -
29 HHSearch 57.0224% 5 - C1 -3KHU - UGDH_HUMAN -
27 HHSearch 56.7726% 2 - C1 -2O3J - UGDH_CAEEL -
30 HHSearch 56.6524% -1 - C1 -5VR8 - ? -
24 HHSearch 56.4028% 18 * C1 *2Y0C - ? -
33 HHSearch 56.3129% 17 - C1 -4A7P - ? -
31 HHSearch 55.0629% 0 - C- -3GG2 - ? -
37 HHSearch 54.5827% 1 - C1 -1MUU - ALGD_PSEAE -
36 HHSearch 53.4627% 1 - C1 -1MV8 - ALGD_PSEAE -
34 HHSearch 53.1827% 5 - C1 -3VTF - ? -
45 Fugue 52.4125% 14 - C1 -2O3J - UGDH_CAEEL -
8 PsiBlast_PDB 52.1029% 9 - C1 -3GG2 - ? -
39 HHSearch 52.0921% -8 - C1 -4XR9 - ? -
35 HHSearch 52.0524% 17 - C1 -3G79 - ? -