@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0329: (2017-12-20 )
MNKPTILRLIKYLSISFLSLVIAAIVLGGGVFFYYVSKAPSLSESKLVATTSSKIYDNKNQLIADLGSERRVNAQANDIPTDLVKAIVSIEDHRFFDHRGIDTIRILGAFLRNLQSNSLQGGSALTQQLIKLTYFSTSTSDQTISRKAQEAWLAIQLEQKATKQEILTYYINKVYMSNGNYGMQTAAQNYYGKDLNNLSLPQLALLAGMPQAPNQYDPYSHPEAAQDRRNLVLSEMKNQGYISAEQYEKAVNTPITDGLQSLKSASNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKNGARSTWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNSTTTNPNNNTQQSNTTPDQQNQNPQPAQP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMG_D_14(2ZC5)
?
[Raw transfer]



PCZ_B_12(2C5W)
?
[Raw transfer]



TEB_B_13(2ZC6)
?
[Raw transfer]



BMG_B_13(2ZC5)
?
[Raw transfer]



TEB_D_14(2ZC6)
?
[Raw transfer]



63U_A_2(5HLA)
PBPB_ECOLI
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]
22 PsiBlast_CBE 83.2299% -52 - C1 -2ZC5 4.4 ?
3 PsiBlast_PDB 82.8999% -54 - C1 -2C5W 4.1 ?
1 PsiBlast_PDB 82.7799% -55 - C1 -2ZC5 5.4 ?
21 PsiBlast_CBE 82.7699% -53 - C1 -2ZC6 3.6 ?
4 PsiBlast_PDB 82.6799% -51 - C1 -2C6W - ? -
2 PsiBlast_PDB 82.4899% -52 - C1 -2ZC6 3.6 ?
5 PsiBlast_PDB 78.1388% -53 - C1 -2V2F 2.6 ?
54 HHSearch 73.9797% 3 - C1 -2C6W - ? -
55 HHSearch 69.4985% 2 - C1 -2V2F 2.6 ?
14 PsiBlast_PDB 63.8928% 16 - C1 -5HLB - PBPB_ECOLI -
37 HHSearch 62.3132% 53 - C1 -2OLV - ? -
31 Fugue 61.9229% -3 - C1 -3UDI - ? -
7 PsiBlast_PDB 61.9031% 46 - C1 -2OLV - ? -
40 HHSearch 60.0133% 55 - C1 -3DWK - ? -
6 PsiBlast_PDB 59.7131% 60 - C1 -2OLU - ? -
39 HHSearch 59.5929% 17 - C1 -5HLB - PBPB_ECOLI -
13 PsiBlast_PDB 58.3528% 20 - C1 -5HLA 4.3 PBPB_ECOLI
18 PsiBlast_PDB 57.1828% 16 - C1 -3FWL - PBPB_ECOLI -
43 HHSearch 55.6128% 25 - C1 -5U2G - PBPA_HAEIN -
42 HHSearch 52.1928% 22 - C1 -5U2G - PBPA_HAEIN -