@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0335: (2017-12-20 )
MTKANFGVVGMAVMGRNLALNIESRGYTVAIYNRSKEKTEDVIACHPEKNFVPSYDVESFVNSIEKPRRIMLMVQAGPGTDATIQALLPHLDKGDILIDGGNTFYKDTIRRNEELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEISAKAPEDGKPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSAEDMAEIFTEWNKGELDSYLIEITADILSRKDDEGQDGPIVDYILDAAGNKGTGKWTSQSSLDLGVPLSLITESVFARYISTYKEERVHASKVLPKPAAFNFEGDKAELIEKIRQALYFSKIISYAQGFAQLRVASKENNWNLPFADIASIWRDGCIIRSRFLQKITDAYNRDADLANLLLDEYFLDVTAKYQQAVRDIVALAVQAGVPVPTFSAAITYFDSYRSADLPANLIQAQRDYFGAHTYQRKDKEGTFHYSWYDEK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_A_3(2W90)
?
[Raw transfer]




6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_A_3(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]




6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]




6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]




6PG_A_3(2W8Z)
?
[Raw transfer]




GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]




NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]




6PG_B_7(2W8Z)
?
[Raw transfer]




ATR_B_4(3FWN)
6PGD_ECOLI
[Raw transfer]




NBP_A_4(1PGN)
6PGD_SHEEP
[Raw transfer]




3PG_A_5(4GWK)
6PGD_HUMAN
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]




TRS_A_4(2W90)
?
[Raw transfer]




TRS_A_4(2W90)
?
[Raw transfer]




23 PsiBlast_CBE 99.0773%-108 - C2 -2IZ0 - 6PGD_LACLM -
22 PsiBlast_CBE 98.5373%-106 - C2 -2IZ1 - 6PGD_LACLM -
21 PsiBlast_CBE 98.4873%-107 - C2 -2IZ1 - 6PGD_LACLM -
24 PsiBlast_CBE 98.3673%-105 - C2 -2IZ0 - 6PGD_LACLM -
2 PsiBlast_PDB 98.2873%-101 - C2 -2IZ1 - 6PGD_LACLM -
26 PsiBlast_CBE 98.2773%-106 - C2 -2IYP - 6PGD_LACLM -
1 PsiBlast_PDB 98.2773%-103 - C2 -2IZ0 - 6PGD_LACLM -
25 PsiBlast_CBE 98.0773%-108 - C2 -2IYP - 6PGD_LACLM -
4 PsiBlast_PDB 97.9873%-102 - C2 -2IYO 3.9 6PGD_LACLM
3 PsiBlast_PDB 96.2173%-100 - C2 -2IYP - 6PGD_LACLM -
28 PsiBlast_CBE 95.1269% -97 - C2 -2ZYD 3.2 6PGD_ECOLI
29 PsiBlast_CBE 95.0669% -97 - C2 -2ZYA 3.9 6PGD_ECOLI
27 PsiBlast_CBE 94.8370% -98 - C2 -3FWN 6.8 6PGD_ECOLI
8 PsiBlast_PDB 94.7469%-100 - C2 -2ZYD - 6PGD_ECOLI -
54 HHSearch 94.6970%-101 - C2 -2ZYD - 6PGD_ECOLI -
7 PsiBlast_PDB 94.5169% -99 - C2 -2ZYA 3.9 6PGD_ECOLI
30 PsiBlast_CBE 94.3166%-104 - C2 -2W90 2.7 ?
9 PsiBlast_PDB 94.2066%-105 - C2 -2W90 4.4 ?
6 PsiBlast_PDB 94.1770% -99 - C2 -3FWN 4.6 6PGD_ECOLI
5 PsiBlast_PDB 94.0270% -99 - C2 -2ZYG - ? -
10 PsiBlast_PDB 93.5766%-103 - C2 -2W8Z 3.4 ?
31 PsiBlast_CBE 93.5066%-103 - C2 -2W8Z 2.7 ?
52 HHSearch 88.2167% -64 - C2 -2W90 2.7 ?
57 HHSearch 85.1873% -23 - C2 -2IYO 3.9 6PGD_LACLM
55 HHSearch 80.0951% -34 - C2 -4GWG 2.8 6PGD_HUMAN
17 PsiBlast_PDB 79.7651% -34 - C2 -4GWG 2.8 6PGD_HUMAN
13 PsiBlast_PDB 79.6252% -33 - C2 -1PGP 3.2 6PGD_SHEEP
18 PsiBlast_PDB 79.1551% -33 - C2 -4GWK 3.4 6PGD_HUMAN
12 PsiBlast_PDB 78.7952% -36 - C2 -1PGO 7.6 6PGD_SHEEP
11 PsiBlast_PDB 78.6752% -34 - C2 -1PGN 7.5 6PGD_SHEEP