@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0372: (2017-12-20 )
MLDIKRIRTDFEAVAEKLATRGVDAAVLNEMKEIDAKRRNILVKVETLKAERNTVSAEIAQAKRNKENTDDKIAAMQNLSAEVKALDAELAEIDAKLTEFTTTLPNIPADSVPVGADEDDNVEVRRWGTPREFDFEPKAHWDLGEDLGILDWERGGKVTGARFLFYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTNFVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFAKPEESYEELEKMTANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWIPAQNNYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQNEDGSVTIPEALRPYMGGAEVIKP

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3LSS)
?
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



AHX_C_3(1SES)
SYS_THET2
[Raw transfer]



ATP_B_7(3LSS)
?
[Raw transfer]



SSA_D_4(1SET)
SYS_THET2
[Raw transfer]



ANP_A_4(4RQF)
SYSC_HUMAN
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_D_4(1SES)
SYS_THET2
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]



AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]



ANP_B_7(4RQF)
SYSC_HUMAN
[Raw transfer]
45 HHSearch 72.5656% 33 - C1 -2DQ3 6.5 SYS_AQUAE
1 PsiBlast_PDB 71.9655% 34 - C1 -2DQ3 6.5 SYS_AQUAE
49 HHSearch 68.3738% -17 - C1 -1SRY - SYS_THET2 -
48 HHSearch 68.2338% -19 - C1 -1SER - -
50 HHSearch 62.8943% 57 - C1 -2DQ0 - SYS_PYRHO -
51 HHSearch 62.5043% 59 - C1 -2ZR3 - SYS_PYRHO -
22 PsiBlast_CBE 61.9540% 55 - C1 -2DQ0 - SYS_PYRHO -
21 PsiBlast_CBE 61.8940% 56 - C1 -2ZR2 - SYS_PYRHO -
3 PsiBlast_PDB 61.8740% 53 - C1 -2ZR2 - SYS_PYRHO -
24 PsiBlast_CBE 61.5637% 29 - C1 -1SES 5.7 SYS_THET2
2 PsiBlast_PDB 61.5340% 55 - C1 -2DQ0 - SYS_PYRHO -
8 PsiBlast_PDB 61.2837% 34 - C1 -1SET - SYS_THET2 -
23 PsiBlast_CBE 61.2537% 32 - C1 -1SET 6.7 SYS_THET2
7 PsiBlast_PDB 61.1337% 29 - C1 -1SES 6.0 SYS_THET2
5 PsiBlast_PDB 60.5837% 32 - C1 -1SRY - SYS_THET2 -
37 Fugue 60.5434% 41 - C1 -3LSS - ? -
4 PsiBlast_PDB 60.3740% 60 - C1 -2ZR3 - SYS_PYRHO -
53 HHSearch 58.8035% 29 - C1 -3VBB - SYSC_HUMAN -
52 HHSearch 58.2034% 45 - C1 -3LSS - ? -
35 Fugue 58.2030% 28 - C1 -1WLE - SYSM_BOVIN -
9 PsiBlast_PDB 54.0039% 11 - C1 -3ERR 6.0 DYHC1_MOUSE (first)
25 PsiBlast_CBE 53.8839% 10 - C1 -3ERR 5.9 SYS_THET2
36 Fugue 51.2435% 44 - C1 -3ERR 6.0 DYHC1_MOUSE (first)
58 HHSearch 48.3437% 15 * C1 *3ERR 5.9 SYS_THET2