@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0468: (2017-12-23 )
MVTIINIGGSYYLQGILDEYIPNQMKSTLGIISVGLVITYILQQVMSFSRDYLLTVLSQRLSIDVILSYIRHIFELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLAQNPNLFLLSLLSIPIYMFIIFSFMKPFEKMNHDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLSKYSILQTSLKQGTKLVLNILILWFGAQLVMSSKISIGQLITFNTLFSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVESEFQVQENPVHSHFLMGDIEFDDLSYKYGFGRDTLTDINLTIKQGDKVSLVGVSGSGKTTLAKMIVNFFKPYKGHISINHQDIKNIDKKVLRRHINYLPQQAYIFNGSILENLTLGGNHMISQEDILKAYELAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSPVLILDEATSGLDVLTEKKVIDNLISLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_D_5(3VX4)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



AGS_A_3(4S0F)
?
[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



AGS_B_4(4S0F)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]
1 PsiBlast_PDB 83.4940% - - C1 -4RY2 - ? -
109 HHSearch 82.3740% - - C1 -4RY2 - ? -
2 PsiBlast_PDB 67.6339% -20 * C1 *4S0F 2.9 ?
105 HHSearch 67.0430% - - C1 -4Q4H - Y288_THEMA -
22 PsiBlast_CBE 66.0869%-123 - C1 -3VX4 6.3 ?
21 PsiBlast_CBE 65.0939% -20 - C1 -4S0F 1.9 ?
3 PsiBlast_PDB 64.0569%-123 - C1 -3VX4 6.7 ?
104 HHSearch 63.4830% -24 - C1 -3QF4 - Y288_THEMA -
108 HHSearch 63.4726% -27 - C1 -5MKK - ? -
98 HHSearch 63.1326% -38 - C1 -5MKK - ? -
16 PsiBlast_PDB 61.9628% -21 - C1 -5MKK - ? -
9 PsiBlast_PDB 60.1331% - - C1 -4Q4H - Y288_THEMA -
97 HHSearch 59.6027% -13 - C1 -4AYX - ABCBA_HUMAN -
13 PsiBlast_PDB 58.0528% -11 - C1 -4AYX - ABCBA_HUMAN -
8 PsiBlast_PDB 57.8431% -1 - C1 -4Q4A - Y288_THEMA -
11 PsiBlast_PDB 57.8227% - - C1 -3B5X - MSBA_VIBCH -
17 PsiBlast_PDB 57.7326% - - C1 -3B5W - MSBA_ECOLI -
7 PsiBlast_PDB 57.2831% -5 - C1 -3QF4 - Y288_THEMA -
19 PsiBlast_PDB 56.8426% - - C1 -3B5Z 2.3 MSBA_SALTY
101 HHSearch 56.8024% - - C1 -4Q4H - ? -
80 PsiBlast_CBE 22.1732% -1 - C1 -4U00 4.4 ?