@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0481: (2017-12-23 )
MSKKRLYEIAKELGKESKEVVARAKELGLDVKSHSSSVEEAVAAKIAASFKPAAAPKVEAKPAAPKVSAEKKTEKSEPAKPAVAKEEAKPAEPVAPKTEKVAAKPQSRNFKAEREARAKEQAERRKQNKGNNRDQQQNGNRQKNDGRNGGKQGQSNRDNRRFNDQAKKQQGQQKRRNERRQQEDKRSNQAAPRIDFKARAAALKAEQNAEYARSSEERFKQYQAAKEALAQANKRKEPEEIFEEAAKLAEQAQQVQAVVEVVPEKKEPAVDTRRKKQARPDKNRDDYDHEEDGPRKQQKNRSSQNQVRNQKNSNWNNNKKNKKGNNKNNRNQTPKPVTERKFHELPTEFEYTDGMTVAEIAKRIKREPAEIVKKLFMMGVMATQNQSLDGETIELLMVDYGIEAKQKVEVDNADIERFFVEDGYLNEDELVERPPVVTIMGHVDHGKTTLLDTLRNSRVATGEAGGITQHIGAYQIVENGKKITFLDTPGHAAFTSMRARGASVTDITILVVAADDGVMPQTIEAINHSKAANVPIIVAINKIDKPGANPERVIGELAEHGVMSTAWGGDSEFVEISAKFNQNIEELLETVLLVAEIQELKADPTVRAIGTVIEARLDKGKGAVATLLVQQGTLNVQDPIVVGNTFGRVRAMTNDLGRRVKVAGPSTPVSITGLNEAPMAGDHFAVYEDEKSARAAGEERAKRALMKQRQATQRVSLENLFDTLKAGELKSVNVIIKADVQGSVEALSASLQKIDVEGVKVTIVHSAVGAINESDVTLAEASNAFIVGFNVRPTPQARQQAEADDVEIRLHSIIYKVIEEMEEAMKGMLDPEFEEKVIGEAVIRETFKVSKVGTIGGFMVINGKVARDSKVRVIRDGVVIYDGELASLKHYKDDVKEVTNGREGGLMIDGYNDIKMDDVIEAYVMEEIKR

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_2(4B48)
IF2_THET8
[Raw transfer]



GDP_A_2(4B47)
IF2_THET8
[Raw transfer]



GTP_A_3(4TMX)
IF2P_CHATD
[Raw transfer]



GDP_A_2(4B44)
IF2_THET8
[Raw transfer]



GTP_B_6(4TMW)

[Raw transfer]



GNP_A_2(4ZU9)
?
[Raw transfer]



GNP_A_3(1G7T)
IF2P_METTH
[Raw transfer]



GDP_B_2(1G7S)
IF2P_METTH
[Raw transfer]



GDP_A_2(5FG3)
IF2P_AERPE
[Raw transfer]



GDP_A_2(5FG3)
IF2P_AERPE
[Raw transfer]



GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]



GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]
4 PsiBlast_PDB 76.5044% -53 - C2 -3J4J - IF2_THET8 -
1 PsiBlast_PDB 75.2751% 11 - C2 -5ME0 - IF2_ECOLI -
2 PsiBlast_PDB 74.7851% 11 - C2 -5ME1 - IF2_ECOLI -
124 HHSearch 72.3941% -3 - C2 -3J4J - IF2_THET8 -
6 PsiBlast_PDB 71.3844% -64 - C2 -4KJZ - IF2_THET8 -
154 Fugue 70.6942% -93 - C2 -4B3X 3.0 IF2_THET8
21 PsiBlast_CBE 69.5944% -68 - C2 -4KJZ - IF2_THET8 -
10 PsiBlast_PDB 68.9951%-102 - C2 -4B48 6.5 IF2_THET8
9 PsiBlast_PDB 67.9451%-104 - C2 -4B47 7.4 IF2_THET8
11 PsiBlast_PDB 67.3751%-107 - C2 -4B44 7.0 IF2_THET8
12 PsiBlast_PDB 66.9950% -95 - C2 -4B3X 3.0 IF2_THET8
13 PsiBlast_PDB 66.6450%-106 - C2 -4B43 - IF2_THET8 -
125 HHSearch 63.7755% -52 - C2 -1ZO1 - IF2_ECOLI -
129 HHSearch 62.5732% 22 - C2 -1G7S 5.8 IF2P_METTH
134 HHSearch 62.1743% -32 - C2 -4B43 - IF2_THET8 -
126 HHSearch 61.9746% 10 - C6 -3IZY - IF2M_BOVIN -
156 Fugue 61.8829% 16 - C2 -1G7S - IF2P_METTH -
8 PsiBlast_PDB 61.7971%-127 - C3 -2LKD - -
133 HHSearch 61.7129% -5 - C2 -4N3S - IF2P_YEAST -
132 HHSearch 61.6232% 28 - C2 -5FG3 8.0 IF2P_AERPE
14 PsiBlast_PDB 59.8032% 25 - C2 -5FG3 8.0 IF2P_AERPE
140 HHSearch 50.7232% -5 - C2 -4TMW 8.4
139 HHSearch 48.7932% -4 - C2 -4TMX 9.0 IF2P_CHATD