@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0588: (2017-12-25 )
MKTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHHLIDVREITESYSAFDFVSEAKMTIEDIHSRGKLAIIAGGTGLYIQSLLEGYHLGGETPHEEILAYRASLEPYSDEELAHLVEQAGLEIPQFNRRRAMRALEIAHFGQDLENQEILYEPLIICLDDERSQLYERINHRVDLMFEAGLLDEAKWLFDHSPNVQAAKGIGYKELFPYFRGEQTFEEARESLKQATRRFAKRQLTWFRNRMQVTFYQIGESGVQDRILSQIEEFLDD

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



DPO_A_3(3CRQ)
MIAA_PSEAE
[Raw transfer]



PPV_B_17(3EPH)
MOD5_YEAST
[Raw transfer]



PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]



DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]



DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]



DST_B_6(2ZXU)
MIAA_ECOLI
[Raw transfer]



DMA_B_10(3EPL)
MOD5_YEAST
[Raw transfer]



DMA_A_6(3EPL)
MOD5_YEAST
[Raw transfer]
2 PsiBlast_PDB 77.5043% -47 - C3 -3EXA - MIAA_BACHD -
47 HHSearch 77.3646% -22 - C3 -3EXA - MIAA_BACHD -
48 HHSearch 77.0446% -28 - C3 -3EXA - MIAA_BACHD -
46 HHSearch 75.3543% -45 - C3 -3D3Q - MIAA_STAES -
45 HHSearch 74.7343% -23 - C3 -3D3Q - MIAA_STAES -
3 PsiBlast_PDB 72.9841% -26 - C3 -3D3Q - MIAA_STAES -
1 PsiBlast_PDB 69.7743% -41 - C3 -2QGN - MIAA_BACHD -
50 HHSearch 69.3333% -42 - C3 -3FOZ - MIAA_ECOLI -
9 PsiBlast_PDB 69.1334% -34 - C3 -2ZXU 4.9 MIAA_ECOLI
8 PsiBlast_PDB 68.9234% -37 - C3 -3FOZ - MIAA_ECOLI -
10 PsiBlast_PDB 68.6733% -38 - C3 -2ZM5 - MIAA_ECOLI -
51 HHSearch 68.6133% -41 - C3 -2ZXU 4.9 MIAA_ECOLI
26 PsiBlast_CBE 67.5934% -34 - C3 -2ZXU 3.7 MIAA_ECOLI
36 Fugue 67.4430% -35 - C3 -3EPH - MOD5_YEAST -
52 HHSearch 66.0532% -43 - C3 -3EPH - MOD5_YEAST -
49 HHSearch 65.0634% -90 - C3 -3CRR 4.2 MIAA_PSEAE
24 PsiBlast_CBE 63.9831% -41 - C3 -3EPH 2.7 MOD5_YEAST
6 PsiBlast_PDB 63.2631% -38 - C3 -3EPK - MOD5_YEAST -
22 PsiBlast_CBE 63.2231% -38 - C3 -3EPK - MOD5_YEAST -
4 PsiBlast_PDB 62.6231% -40 - C3 -3EPH 3.9 MOD5_YEAST
7 PsiBlast_PDB 62.0231% -38 - C3 -3EPL 2.2 MOD5_YEAST
21 PsiBlast_CBE 61.7331% -33 - C3 -3EPL 3.6 MOD5_YEAST
13 PsiBlast_PDB 60.4332%-108 - C3 -3CRR 4.2 MIAA_PSEAE
12 PsiBlast_PDB 60.3832%-110 - C3 -3CRQ 3.4 MIAA_PSEAE