@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0662: (2017-12-26 )
MALLEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTLDGHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRLPAFYKSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRRLEIVRALATEPKILFLDEPAAGMNPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDEIKTNKRVIEAYLGGEA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]




ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]




79 HHSearch 86.5835%-119 - C1 -4P32 - LPTB_ECOLI -
8 PsiBlast_PDB 83.9333%-121 - C1 -4P33 - LPTB_ECOLI -
3 PsiBlast_PDB 82.9433%-114 - C1 -4QC2 7.1 ?
5 PsiBlast_PDB 82.6533%-117 - C1 -4P32 6.2 LPTB_ECOLI
26 PsiBlast_CBE 81.8133%-118 - C1 -4P33 - LPTB_ECOLI -
10 PsiBlast_PDB 81.1933%-116 - C1 -4P31 - LPTB_ECOLI -
9 PsiBlast_PDB 80.6033%-131 - C1 -4WBS - ? -
22 PsiBlast_CBE 80.0933%-118 - C1 -4QC2 7.3 ?
23 PsiBlast_CBE 79.6633%-120 - C1 -4P32 - LPTB_ECOLI -
6 PsiBlast_PDB 77.9132%-118 - C1 -1G6H 6.3 LIVG_METJA
2 PsiBlast_PDB 74.6633% -45 - C1 -5X5Y - ? -
4 PsiBlast_PDB 74.0632%-110 - C1 -1GAJ - LIVG_METJA -
7 PsiBlast_PDB 72.4932%-113 - C1 -1G9X 6.1 LIVG_METJA
25 PsiBlast_CBE 72.1632%-125 - C1 -1G9X 5.7 LIVG_METJA
77 HHSearch 71.6835%-122 - C1 -4YER - ? -
74 HHSearch 70.4927%-133 - C1 -3RLF - MALK_ECOLI -
75 HHSearch 69.0727%-127 - C1 -2AWN - MALK_ECOLI -
67 Fugue 68.9934% 24 - C1 -1Z47 - ? -
81 HHSearch 68.2533%-119 - C1 -2YYZ - ? -
1 PsiBlast_PDB 68.2036%-123 - C1 -1Z47 - ? -
24 PsiBlast_CBE 65.9732%-110 - C1 -1G9X 4.5 LIVG_METJA