@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0715: (2017-12-28 )
MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]



ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]



ADP_A_2(4PRX)
GYRB_ECOLI
[Raw transfer]



ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]



ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]



ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]



ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]



ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]



DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]



920_A_2(4KSG)
GYRB_ENTFA
[Raw transfer]



1A0_A_2(4HXW)
GYRB_ENTFA
[Raw transfer]



XAM_C_7(4URM)
?
[Raw transfer]



XAM_B_6(4URM)
?
[Raw transfer]



XAM_A_5(4URM)
?
[Raw transfer]



NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]



NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]



XAM_D_8(4URM)
?
[Raw transfer]



NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]



NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]



NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]



NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]



NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]



19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]



4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]
1 PsiBlast_PDB 100.0049% 0 - C- -4I3H - ? -
2 PsiBlast_PDB 78.0149% 22 - C1 -4JUO - PARE_STRPN -
135 HHSearch 67.6851% -69 * C2 *3ZKB - GYRB_MYCTU -
31 PsiBlast_CBE 62.3848% -7 - C2 -3ZKD - GYRB_MYCTU -
144 HHSearch 62.0348% 1 - C2 -1KIJ 7.6 GYRB_THET8
136 HHSearch 61.3851% -4 - C2 -3ZKB - GYRB_MYCTU -
47 PsiBlast_CBE 61.3647% -1 - C2 -1KIJ 7.6 GYRB_THET8
3 PsiBlast_PDB 61.01100%-124 - C1 -4Z2C - ? -
29 PsiBlast_CBE 60.9348% -12 - C2 -3ZKD - GYRB_MYCTU -
26 PsiBlast_CBE 60.9048% -6 - C2 -3ZKD - GYRB_MYCTU -
4 PsiBlast_PDB 60.69100%-124 - C1 -4Z2D - ? -
17 PsiBlast_PDB 60.6047% -0 - C2 -1KIJ 7.0 GYRB_THET8
7 PsiBlast_PDB 60.5148% -11 - C2 -3ZKD - GYRB_MYCTU -
5 PsiBlast_PDB 60.38100%-117 - C1 -4Z2E - ? -
123 HHSearch 60.1996%-131 - C1 -4Z2D - ? -
23 PsiBlast_CBE 60.13100%-113 - C1 -4Z2C - ? -
127 HHSearch 59.8658% -33 - C1 -4TMA - ? -
21 PsiBlast_CBE 59.63100%-123 - C1 -4Z2E - ? -
25 PsiBlast_CBE 59.2048% -34 - C2 -3ZM7 - GYRB_MYCTU -
22 PsiBlast_CBE 59.19100%-117 - C1 -4Z2D - ? -
132 HHSearch 58.7252% 19 - C2 -1EI1 8.4 GYRB_ECOLI
112 Fugue 58.2151% 18 - C2 -1EI1 8.0 GYRB_ECOLI
111 Fugue 58.0451% 18 - C2 -1EI1 8.0 GYRB_ECOLI
11 PsiBlast_PDB 57.2751% 12 - C2 -4XTJ 9.7 GYRB_ECOLI
10 PsiBlast_PDB 57.1651% 13 - C2 -4WUD 10.1 GYRB_ECOLI
9 PsiBlast_PDB 56.7551% 15 - C2 -4WUC 10.1 GYRB_ECOLI
8 PsiBlast_PDB 56.4551% 14 - C2 -4WUB 10.1 GYRB_ECOLI
12 PsiBlast_PDB 56.1151% 12 - C2 -4PRV 7.4 GYRB_ECOLI
46 PsiBlast_CBE 55.9651% 16 - C2 -1EI1 8.4 GYRB_ECOLI
15 PsiBlast_PDB 55.9451% 16 - C2 -1EI1 8.0 GYRB_ECOLI
13 PsiBlast_PDB 55.7951% 8 - C2 -4PRX 7.8 GYRB_ECOLI
141 HHSearch 55.5237% -7 - C2 -1S16 10.1 PARE_ECOLI
16 PsiBlast_PDB 55.4751% 4 - C2 -4ZVI 5.2 GYRB_ECOLI
14 PsiBlast_PDB 54.8151% 7 - C2 -4PU9 7.1 GYRB_ECOLI
19 PsiBlast_PDB 48.6281% -82 - C2 -4K4O 8.0 GYRB_ENTFA
98 PsiBlast_CBE 47.9167% -72 - C2 -4URM 10.1 ?
20 PsiBlast_PDB 47.5781% -78 - C2 -4KSG 8.4 GYRB_ENTFA
18 PsiBlast_PDB 47.5181% -81 - C2 -4HXW 7.4 GYRB_ENTFA
99 PsiBlast_CBE 47.4467% -73 - C2 -4URM 10.5 ?
97 PsiBlast_CBE 45.7867% -79 - C2 -4URM 7.9 ?
95 PsiBlast_CBE 44.3867% -77 - C2 -4URO 5.9 GYRB_STAAU
92 PsiBlast_CBE 44.2567% -80 - C2 -4URO 5.3 GYRB_STAAU
94 PsiBlast_CBE 44.2267% -73 - C2 -4URO 6.0 GYRB_STAAU
93 PsiBlast_CBE 43.9267% -73 - C2 -4URO 5.7 GYRB_STAAU
96 PsiBlast_CBE 43.9067% -71 - C2 -4URM 9.6 ?
113 Fugue 39.7748% -74 - C2 -1EI1 Error GYRB_ECOLI
116 Fugue 35.4149% 26 - C2 -1EI1 7.3 GYRB_ECOLI