@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0757: (2017-12-29 )
MYLMSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEVFDAYLQEVVTEDK

Atome Classification :

(61 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



TR6_H_11(4Z2E)
?
[Raw transfer]



NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_6(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_F_7(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_V_7(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
TR6_F_9(4Z2E)
?
[Raw transfer]



NACID_E_5(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_V_11(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_V_13(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_W_15(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_V_11(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
90 HHSearch 84.56100% -66 - C6 -4KOE - PARC_STRPN -
10 PsiBlast_PDB 84.3599% -66 - C6 -4KOE - PARC_STRPN -
9 PsiBlast_PDB 84.2499% -67 - C6 -3RAE 5.1 PARC_STRPN
26 PsiBlast_CBE 84.1199% -68 - C6 -3RAD 4.0 PARC_STRPN
8 PsiBlast_PDB 84.0799% -63 - C6 -3RAD 4.7 PARC_STRPN
21 PsiBlast_CBE 83.9599% -69 - C6 -4KPF - PARC_STRPN -
11 PsiBlast_PDB 83.9299% -68 - C6 -4KPE - PARC_STRPN -
24 PsiBlast_CBE 83.8399% -66 - C6 -3RAF 4.5 PARC_STRPN
25 PsiBlast_CBE 83.6999% -65 - C6 -3RAE 3.1 PARC_STRPN
22 PsiBlast_CBE 83.6799% -61 - C6 -4KPE - PARC_STRPN -
23 PsiBlast_CBE 83.5399% -64 - C6 -4KOE - PARC_STRPN -
29 PsiBlast_CBE 83.4499% -74 - C6 -3KSA 4.5 PARC_STRPN
7 PsiBlast_PDB 83.4299% -64 - C6 -3RAF 4.5 PARC_STRPN
12 PsiBlast_PDB 83.3099% -70 - C6 -4KPF - PARC_STRPN -
27 PsiBlast_CBE 83.2499% -66 - C6 -3LTN 3.7 PARC_STRPN
6 PsiBlast_PDB 83.1999% -66 - C6 -3LTN 3.9 PARC_STRPN
4 PsiBlast_PDB 83.1399% -73 - C6 -3KSA 4.9 PARC_STRPN
28 PsiBlast_CBE 83.0999% -77 - C6 -3KSB 3.1 PARC_STRPN
30 PsiBlast_CBE 83.0199% -65 - C6 -3K9F 4.3 PARC_STRPN
5 PsiBlast_PDB 83.0199% -76 - C6 -3KSB 4.3 PARC_STRPN
3 PsiBlast_PDB 83.0099% -65 - C6 -3K9F 4.9 PARC_STRPN
2 PsiBlast_PDB 75.2699% -76 - C6 -3FOF 3.1 PARC_STRPN
1 PsiBlast_PDB 75.0199% -77 - C6 -3FOE 3.9 PARC_STRPN
31 PsiBlast_CBE 71.4851% -80 - C6 -4Z2E 2.6 ?
16 PsiBlast_PDB 71.0651% -72 - C6 -4Z2E 2.6 ?
59 PsiBlast_CBE 65.1142% -33 - C6 -2Y3P 3.2 GYRA_ECOLI (first)
60 PsiBlast_CBE 64.9042% -34 - C6 -2Y3P 2.8 GYRA_ECOLI (first)
39 PsiBlast_CBE 64.4844% -11 - C6 -5CDP 6.6 GYRA_STAAN
57 PsiBlast_CBE 64.3344% -13 - C6 -5CDN 5.8 GYRA_STAAN (first)
18 PsiBlast_PDB 64.2044% -11 - C6 -5IWI 4.3 GYRA_STAAN (first)
37 PsiBlast_CBE 64.1044% -13 - C6 -5CDR 4.8 GYRA_STAAN
88 HHSearch 64.0644% -12 - C6 -5IWI 4.3 GYRA_STAAN (first)
53 PsiBlast_CBE 64.0144% -15 - C6 -5CDQ 3.8 GYRA_STAAN
38 PsiBlast_CBE 63.9944% -12 - C6 -5CDR 3.4 GYRA_STAAN
36 PsiBlast_CBE 63.9644% -11 - C6 -5IWI 5.1 GYRA_STAAN
47 PsiBlast_CBE 63.7144% -16 - C6 -5CDO 4.5 GYRA_STAAN
52 PsiBlast_CBE 63.6044% -13 - C6 -5CDQ 5.9 GYRA_STAAN
56 PsiBlast_CBE 63.4744% -16 - C6 -5CDN 5.1 GYRA_STAAN (first)
19 PsiBlast_PDB 63.4444% -11 - C6 -5IWM 5.7 GYRA_STAAN (first)
35 PsiBlast_CBE 63.4044% -13 - C6 -5IWM 6.1 GYRA_STAAN
20 PsiBlast_PDB 63.3344% -11 - C6 -5CDP 5.3 GYRA_STAAN
49 PsiBlast_CBE 63.2244% -13 - C6 -5CDM Error GYRA_STAAN
89 HHSearch 63.0445% -13 - C6 -5CDM Error GYRA_STAAN
42 PsiBlast_CBE 62.3844% -13 - C6 -2XCR 4.9 GYRA_STAAN (first)
93 HHSearch 62.1344% -13 * C6 *2XCR 4.9 GYRA_STAAN (first)
41 PsiBlast_CBE 62.0644% -12 - C6 -2XCR 4.1 GYRA_STAAN (first)
43 PsiBlast_CBE 61.8444% -13 - C6 -2XCR 5.8 GYRA_STAAN (first)
40 PsiBlast_CBE 61.6644% -14 - C6 -2XCR 3.9 GYRA_STAAN (first)
62 PsiBlast_CBE 60.2842% 10 - C6 -3IFZ 3.5 GYRA_MYCTU
91 HHSearch 59.7843% 16 - C6 -3ILW 2.7 GYRA_MYCTU
64 PsiBlast_CBE 59.5243% 14 - C6 -3ILW 2.7 GYRA_MYCTU
63 PsiBlast_CBE 59.2943% 13 - C6 -3ILW 2.2 GYRA_MYCTU
61 PsiBlast_CBE 59.0542% 15 - C6 -3IFZ 3.0 GYRA_MYCTU
44 PsiBlast_CBE 47.2844% 18 - C6 -5CDO 5.4 GYRA_STAAN
51 PsiBlast_CBE 47.2744% 20 - C6 -5CDQ 5.3 GYRA_STAAN
50 PsiBlast_CBE 46.6244% 23 - C6 -5CDQ 3.8 GYRA_STAAN
55 PsiBlast_CBE 46.1744% 20 - C6 -5CDN 4.4 GYRA_STAAN
54 PsiBlast_CBE 46.1144% 23 - C6 -5CDN 5.5 GYRA_STAAN
48 PsiBlast_CBE 45.9344% 25 - C6 -5CDM 6.1 GYRA_STAAN
46 PsiBlast_CBE 45.1944% 25 - C6 -5CDO 4.8 GYRA_STAAN
45 PsiBlast_CBE 44.7644% 24 - C6 -5CDO 4.8 GYRA_STAAN