@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0845: (2017-12-30 )
MKMANPKYKRILIKLSGEALAGERGVGIDIQTVQTIAKEIQEVHSLGIEIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQVGVDTRVQTAIAMQQVAEPYVRGRALRHLEKGRIVIFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDKTAVKFEELTHRDVINKGLRIMDSTASTLSMDNDIDLVVFNMNQSGNIKRVVFGENIGTTVSNNIEEKE

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]



UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]



UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]



ANP_A_3(2BRI)
PYRH_PYRFU
[Raw transfer]



GOL_B_6(1YBD)
PYRH_NEIMB
[Raw transfer]
1 PsiBlast_PDB 95.2882%-142 - C1 -1Z9D - PYRH_STRP1 -
49 HHSearch 87.5083% -53 - C1 -1Z9D - PYRH_STRP1 -
34 PsiBlast_CBE 83.7748%-146 - C1 -2V4Y - PYRH_ECOLI -
7 PsiBlast_PDB 83.5748%-147 - C1 -2V4Y - PYRH_ECOLI -
26 PsiBlast_CBE 82.9950%-151 - C1 -3EK5 - PYRH_XANCP -
27 PsiBlast_CBE 82.7850%-149 - C1 -3EK5 - PYRH_XANCP -
32 PsiBlast_CBE 82.6548%-146 - C1 -2V4Y - PYRH_ECOLI -
44 HHSearch 82.5849%-145 - C1 -3EK6 - PYRH_XANCP -
3 PsiBlast_PDB 82.4450%-153 - C1 -3EK5 - PYRH_XANCP -
5 PsiBlast_PDB 82.4348%-141 - C1 -2BND 7.7 PYRH_ECOLI
29 PsiBlast_CBE 82.1950%-146 - C1 -3EK5 - PYRH_XANCP -
30 PsiBlast_CBE 82.1448%-136 - C1 -2BND 7.3 PYRH_ECOLI
28 PsiBlast_CBE 82.0450%-151 - C1 -3EK5 - PYRH_XANCP -
10 PsiBlast_PDB 81.8846%-145 - C1 -2BNF 7.7 PYRH_ECOLI
4 PsiBlast_PDB 81.5350%-150 - C1 -3EK6 - PYRH_XANCP -
23 PsiBlast_CBE 81.4054%-160 - C1 -3NWY - PYRH_MYCTU -
24 PsiBlast_CBE 81.2854%-145 - C1 -3NWY - PYRH_MYCTU -
65 Fugue 80.9948%-140 * C1 *2BNE 5.8 PYRH_ECOLI
33 PsiBlast_CBE 80.8948%-152 - C1 -2V4Y - PYRH_ECOLI -
31 PsiBlast_CBE 80.6448%-150 - C1 -2V4Y - PYRH_ECOLI -
6 PsiBlast_PDB 80.1948%-143 - C1 -2BNE 5.8 PYRH_ECOLI
36 PsiBlast_CBE 79.2848%-134 - C1 -2BNE 5.5 PYRH_ECOLI
55 HHSearch 78.7949%-130 - C1 -2BNE 5.5 PYRH_ECOLI
11 PsiBlast_PDB 76.8546%-143 - C1 -1YBD 2.9 PYRH_NEIMB
46 HHSearch 72.0447% -62 - C1 -1YBD 3.0 PYRH_NEIMB
43 PsiBlast_CBE 68.2349% -67 - C1 -4A7W 2.6 PYRH_HELPY
12 PsiBlast_PDB 66.6349% -63 - C1 -4A7W 3.2 PYRH_HELPY
47 HHSearch 66.1147% -63 - C1 -4A7W 2.6 PYRH_HELPY