@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0854: (2017-12-31 )
MLIGIPKEIKNNENCVALTPAGVHSLVSRGHRVLIETNAGLGSGFTDADYQKQGAEIVATAGEAWAAELVVKVKEPLSSEYGYLRDDLLLFTYLHMAAAPELADAMLAAKTTGIAYETVRDNQGQLPLLVPMSEVAGRMAV

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]



NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]



GOL_A_6(4LMP)
?
[Raw transfer]



GOL_A_6(4LMP)
?
[Raw transfer]



NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]



GOL_A_4(4LMP)
?
[Raw transfer]



NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]



2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]



2OP_E_9(2VOJ)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]



NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]



PYR_A_7(1SAY)
?
[Raw transfer]
1 PsiBlast_PDB 92.3466%-108 - C8 -2EEZ - ? -
22 PsiBlast_CBE 90.9858% -86 - C8 -2VOJ 2.7 DHA_MYCTU
87 HHSearch 90.7159% -93 - C8 -2VOE - DHA_MYCTU -
23 PsiBlast_CBE 90.5958% -89 - C8 -2VOJ 3.5 DHA_MYCTU
11 PsiBlast_PDB 90.5155%-102 - C8 -1SAY 3.7 ?
33 PsiBlast_CBE 90.3658% -89 - C8 -2VHW - DHA_MYCTU -
85 HHSearch 90.3455%-102 - C8 -1PJC - ? -
12 PsiBlast_PDB 90.3455%-102 - C8 -1PJC - ? -
6 PsiBlast_PDB 90.3058% -92 - C8 -2VHW - DHA_MYCTU -
34 PsiBlast_CBE 90.1558% -90 - C8 -2VHW - DHA_MYCTU -
26 PsiBlast_CBE 89.3358% -82 - C8 -2VHX - DHA_MYCTU -
24 PsiBlast_CBE 89.1958% -92 - C8 -2VHZ 2.9 DHA_MYCTU
88 HHSearch 89.1059% -89 - C8 -4LMP 3.3 ?
28 PsiBlast_CBE 89.0958% -87 - C8 -2VHX - DHA_MYCTU -
86 HHSearch 88.9655%-105 - C8 -1PJB - ? -
10 PsiBlast_PDB 88.9655%-105 - C8 -1PJB - ? -
5 PsiBlast_PDB 88.7858% -89 - C8 -4LMP 3.3 ?
8 PsiBlast_PDB 88.7158% -76 - C8 -2VHY - DHA_MYCTU -
29 PsiBlast_CBE 88.6058% -87 - C8 -2VHX - DHA_MYCTU -
32 PsiBlast_CBE 88.5658% -89 - C8 -2VHW - DHA_MYCTU -
2 PsiBlast_PDB 88.3858% -92 - C8 -2VHV 2.8 DHA_MYCTU
4 PsiBlast_PDB 87.6958% -88 - C8 -2VOJ 2.8 DHA_MYCTU
21 PsiBlast_CBE 87.4458% -82 - C8 -2VHV 2.9 DHA_MYCTU
9 PsiBlast_PDB 87.2258% -94 - C8 -2VHZ 2.8 DHA_MYCTU