@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0865: (2017-12-31 )
MIRLETMKVVAQEEIAPAIFELVLEGEMVEAMRAGQFLHLRVPDDAHLLRRPISISSIDKANKQCHLIYRIEGAGTAIFSTLSQGDTLDVMGPQGNGFDLSDLDEQNQVLLVGGGIGVPPLLEVAKELHERGVKVVTVLGFANKDAVILKTELAQYGQVFVTTDDGSYGIKGNVSVVINDLDSQFDAVYSCGAPGMMKYINQTFDDHPRAYLSLESRMACGMGACYACVLKVPESETVSQRVCEDGPVFRTGTVVL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_12(2EIX)
?
[Raw transfer]




FAD_B_4(1EP1)
PYRK_LACLM
[Raw transfer]




FAD_B_8(5KSW)
PYRK_LACLA
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FAD_B_5(1EP2)
PYRK_LACLM
[Raw transfer]




FAD_D_11(5KSW)
PYRK_LACLA
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FAD_D_11(5KSW)
PYRK_LACLA
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FMN_A_2(2PIA)
?
[Raw transfer]




1 PsiBlast_PDB 85.1651% -17 - C3 -5KSW 10.6 PYRK_LACLA
4 PsiBlast_PDB 85.0151% -25 - C3 -1EP3 9.9 PYRK_LACLM
25 Fugue 84.9449% -19 - C3 -1EP3 9.1 PYRK_LACLM
2 PsiBlast_PDB 84.6551% -17 - C3 -1EP1 9.7 PYRK_LACLM
3 PsiBlast_PDB 84.4751% -20 - C3 -1EP2 9.4 PYRK_LACLM
21 PsiBlast_CBE 84.3451% -21 - C3 -5KSW 11.2 PYRK_LACLA
37 HHSearch 84.1549% -23 - C3 -1EP3 9.1 PYRK_LACLM
40 HHSearch 82.0948% -21 - C3 -5KSW 10.6 PYRK_LACLA
39 HHSearch 69.8431% -21 - C3 -5JFC - SUDHB_PYRFU -
38 HHSearch 69.6331% -22 - C3 -5JCA - SUDHB_PYRFU -
7 PsiBlast_PDB 66.1631% -14 - C3 -5JCA - SUDHB_PYRFU -
8 PsiBlast_PDB 65.6931% -12 - C3 -5JFC - SUDHB_PYRFU -
36 HHSearch 64.8132% -11 - C3 -4YLF - PYRKH_THEMA -
41 HHSearch 64.3824% -43 - C3 -5VJ7 - ? -
35 HHSearch 62.4132% -18 - C3 -4YLF - PYRKH_THEMA -
5 PsiBlast_PDB 62.1532% -17 - C3 -4YLF - PYRKH_THEMA -
6 PsiBlast_PDB 60.9832% -16 - C3 -4YRY - PYRKH_THEMA -
22 PsiBlast_CBE 60.5132% -32 - C3 -4YRY - PYRKH_THEMA -
23 PsiBlast_CBE 57.9732% -22 - C3 -4YLF - PYRKH_THEMA -
46 HHSearch 54.4424% 13 - C3 -2EIX Error ?