@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0866: (2017-12-31 )
MTTNRLQVSLPGLDLKNPIIPASGCFGFGQEYAKYYDLNLLGSIMIKATTLEPRFGNPTPRVAETPAGMLNAIGLQNPGLEVVLAEKLPWLEREYPNLPIIANVAGFSKQEYAAVSHGISKATNVKAIELNISCPNVDHCNHGLLIGQDPDLAYDVVKAAVEASEVPVYVKLTPSVTDIVTVAKAAEDAGASGLTMINTLVGMRFDLKTRKPILANGTGGMSGPAVFPVALKLIRQVAQTTDLPIIGMGGVDSTEAALEMYLAGASAIGVGTANFTNPYACPDIIENLPKVMDKYGISSLEELRQEVKESLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OXC_A_5(2E6F)
PYRD_TRYCC
[Raw transfer]



FMN_A_3(1EP1)
PYRDB_LACLM
[Raw transfer]



FMN_A_3(1EP3)
PYRDB_LACLM
[Raw transfer]



FMN_A_3(1EP3)
PYRDB_LACLM
[Raw transfer]



FMN_A_3(1EP3)
PYRDB_LACLM
[Raw transfer]



DHB_B_8(2BSL)
PYRDA_LACLM
[Raw transfer]



ORO_A_7(1OVD)
PYRDA_LACLM
[Raw transfer]



FUM_B_12(3TQ0)
?
[Raw transfer]



FMN_A_3(1EP2)
PYRDB_LACLM
[Raw transfer]



FMN_A_5(5KSW)
PYRDB_LACLA
[Raw transfer]



FMN_A_5(5KSW)
PYRDB_LACLA
[Raw transfer]



ORO_A_10(2B4G)
PYRD_TRYB2
[Raw transfer]



FMN_C_13(5KSW)
PYRDB_LACLA
[Raw transfer]



ACY_A_7(1JUE)
PYRDA_LACLM
[Raw transfer]



ACY_A_12(1JQV)
PYRDA_LACLM
[Raw transfer]
2 PsiBlast_PDB 97.0770%-121 - C1 -1EP1 8.7 PYRDB_LACLM
4 PsiBlast_PDB 95.6570%-117 - C1 -1EP3 8.1 PYRDB_LACLM
1 PsiBlast_PDB 95.4572%-119 - C1 -5KSW 8.7 PYRDB_LACLA
3 PsiBlast_PDB 95.2670%-118 - C1 -1EP2 8.6 PYRDB_LACLM
21 PsiBlast_CBE 94.3372%-116 - C1 -5KSW 8.6 PYRDB_LACLA
42 HHSearch 85.5971% -47 - C1 -1EP3 8.1 PYRDB_LACLM
39 HHSearch 85.3673% -49 - C1 -5KSW 8.7 PYRDB_LACLA
60 Fugue 78.3070% -7 - C1 -1EP3 5.5 PYRDB_LACLM
19 PsiBlast_PDB 58.1730% -36 - C1 -2B4G 4.1 PYRD_TRYB2
49 HHSearch 54.3830% -39 - C1 -3TQ0 3.3 ?
48 HHSearch 54.0630% -36 - C1 -4EF8 - ? -
14 PsiBlast_PDB 52.4028% -48 - C1 -2DOR - PYRDA_LACLM -
12 PsiBlast_PDB 52.3728% -52 - C1 -1OVD 3.7 PYRDA_LACLM
13 PsiBlast_PDB 52.3528% -49 - C1 -1DOR - PYRDA_LACLM -
18 PsiBlast_PDB 52.3228% -51 - C1 -1JQV 3.1 PYRDA_LACLM
11 PsiBlast_PDB 52.3228% -52 - C1 -1JUB - PYRDA_LACLM -
41 HHSearch 52.2628% -37 * C1 *2E6F 4.7 PYRD_TRYCC
20 PsiBlast_PDB 52.2128% -52 - C1 -1JRB - PYRDA_LACLM -
10 PsiBlast_PDB 51.9331% -50 - C1 -4WZH - ? -
15 PsiBlast_PDB 51.8428% -49 - C1 -1JUE 3.0 PYRDA_LACLM