@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0871: (2017-12-31 )
MTFKSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNWRDKKLDLADFGYNEREY

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]




GDP_A_3(5X4B)
?
[Raw transfer]




GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]




GDP_B_8(5X4B)
?
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]




65 HHSearch 78.7947% 13 - C2 -3IEV 10.6 ERA_AQUAE
64 HHSearch 78.2843% - - C2 -1X18 - ERA_THET8 -
3 PsiBlast_PDB 78.1246% 18 - C2 -3IEV 10.6 ERA_AQUAE
5 PsiBlast_PDB 77.1843% - - C2 -1X1L - ERA_THET8 -
66 HHSearch 76.8747% 14 - C2 -3R9X 10.1 ERA_AQUAE
2 PsiBlast_PDB 76.6646% 18 - C2 -3R9X 10.1 ERA_AQUAE
7 PsiBlast_PDB 76.1844% - - C2 -1X18 - ERA_THET8 -
1 PsiBlast_PDB 75.5946% 15 - C2 -3R9W 10.6 ERA_AQUAE
62 HHSearch 74.6343% -6 - C2 -1EGA - ERA_ECOLI -
6 PsiBlast_PDB 74.2043% -11 - C2 -3IEU 7.9 ERA_ECOLI
21 PsiBlast_CBE 74.0943% -12 - C2 -3IEU 8.0 ERA_ECOLI
4 PsiBlast_PDB 73.8343% -7 - C2 -1EGA - ERA_ECOLI -
8 PsiBlast_PDB 72.1538% -27 - C2 -1WF3 - ERA_THET8 -
63 HHSearch 69.0538% 7 - C2 -1WF3 - ERA_THET8 -
14 PsiBlast_PDB 58.6233%-179 - C2 -4DCV - DER_BACSU -
12 PsiBlast_PDB 57.3933%-169 - C2 -4DCS - DER_BACSU -
24 PsiBlast_CBE 57.3133%-163 - C2 -5X4B 7.5 ?
23 PsiBlast_CBE 57.2133%-169 - C2 -4KYU 7.0 DER_BACSU
11 PsiBlast_PDB 56.1733%-140 - C2 -5X4B 7.8 ?
13 PsiBlast_PDB 55.6133%-169 - C2 -4DCU 6.9 DER_BACSU
15 PsiBlast_PDB 55.1732%-176 - C2 -2HJG 6.7 DER_BACSU
10 PsiBlast_PDB 54.9233%-140 - C2 -4KYU 5.9 DER_BACSU