@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0880: (2017-12-31 )
MKMEKLVAYKRMPLWNKQTMPEAVQQKHNTKVGTWGKITVLKGALKFIELTEEGEVLAEHLFEAGADNPMAQPQAWHRVEAATDDVEWYLEFYCKPEDYFAKKYNTNPVHSEVLEAMQTVKQGKALDLGCGQGRNSLFLAQQDFDVTAVDQNGLALEILQSIVEQEDLDMPVGLYDINSASIEQEYDFIVSTVVLMFLQADRIPAIIQNMQEKTSVGGYNLIVCAMDTEDYPCSVNFPFTFKEGELADYYKDWELVKYNENPGHLHRRDENGNRIQLRFATLLAKKIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_D_10(2XVA)
TEHB_ECOLI
[Raw transfer]



SFG_B_6(2XVA)
TEHB_ECOLI
[Raw transfer]



SAH_A_3(2XVM)
TEHB_ECOLI
[Raw transfer]



SFG_A_5(2XVA)
TEHB_ECOLI
[Raw transfer]



SAH_B_4(2XVM)
TEHB_ECOLI
[Raw transfer]



SAH_B_4(2XVM)
TEHB_ECOLI
[Raw transfer]



NHE_C_8(4DQ0)
?
[Raw transfer]



NHE_B_7(4DQ0)
?
[Raw transfer]



NHE_B_7(4DQ0)
?
[Raw transfer]



NHE_C_9(4DQ0)
?
[Raw transfer]



NHE_C_9(4DQ0)
?
[Raw transfer]
25 PsiBlast_CBE 71.4058% -21 - C1 -2XVA 7.3 TEHB_ECOLI
90 HHSearch 71.2258%-232 - C- -3M70 - TEHB_HAEIN -
3 PsiBlast_PDB 71.1458% -17 - C1 -2XVA 7.3 TEHB_ECOLI
4 PsiBlast_PDB 71.0858% -15 - C1 -2XVM 7.3 TEHB_ECOLI
24 PsiBlast_CBE 70.3958% -20 - C1 -2XVM 7.1 TEHB_ECOLI
26 PsiBlast_CBE 69.8458% -16 - C1 -2XVA - TEHB_ECOLI -
21 PsiBlast_CBE 69.7558% -18 - C1 -4DQ0 3.8 ?
23 PsiBlast_CBE 69.7358% -16 - C1 -4DQ0 2.6 ?
27 PsiBlast_CBE 69.6558% -17 - C1 -2XVA - TEHB_ECOLI -
2 PsiBlast_PDB 68.9358% -14 - C1 -4DQ0 2.3 ?
22 PsiBlast_CBE 68.3558% -16 - C1 -4DQ0 2.7 ?
1 PsiBlast_PDB 67.5457%-232 - C- -3M70 - TEHB_HAEIN -
95 HHSearch 65.3759% -25 - C1 -2XVM 7.1 TEHB_ECOLI
96 HHSearch 65.3459% -21 - C1 -2XVA 7.2 TEHB_ECOLI
83 Fugue 47.6315% -30 - C1 -3LCC - HOL1_ARATH -
105 HHSearch 46.8219% -89 - C1 -2P7I - ? -
106 HHSearch 45.0319% -90 - C1 -2P7I - ? -
86 Fugue 43.3014% -2 - C1 -3E23 - ? -
101 HHSearch 42.9919% -38 - C1 -3LCC - HOL1_ARATH -
7 PsiBlast_PDB 39.7423% -84 - C1 -4NEC - ? -