@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0948: (2018-01-01 )
MNTLGDKLMELSAIYHGPESEYAYLYKDKKLHIRIRTKKGDIESINLHYGDPFIFMEEFYQDTKEMVKITSGTLFDHWQVEVSVDFARIQYLFELRDTEGQNILYGDKGCVENSLENLHAIGNGFKLPYLHEIDACKVPDWVSNTVWYQIFPERFANGNALLNPEGTLDWDSSVTPKSDDFFGGDLQGIIDHMDYLQDLGITGLYLCPIFESTSNHKYNTTDYFEIDRHFGDKETFRELVDQAHHRGMKVMLDAVFNHIASQSLQWKNVVKNGEQSAYKDWFHIQQFPVTTEKLVNKRDLPYHVFGFEDYMPKLNTANPEVKNYLLKVATYWIEEFNIDAWRLDVANEIDHQFWKDFRKAVLAKNPDLYILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGIKKTDQFIDEINGESMYYKQQISEVMFNLLDSHDTERILWTANEDVQLVKSALAFLFLQKGTPCIYYVTELALTGGPDPDCRRCMPWERVSSDNDMLNFMKRLIKIRKYASVIISHGKYSLQEINSDLVALEWKYEGRILKAIFNQSTEDYLLEKEAVALASNCQELDNQLVISPDGFMIF

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTT_D_4(1JIB)
NEPU2_THEVU
[Raw transfer]




ARE_B_6(3A6O)
NEPU2_THEVU
[Raw transfer]




ARE_A_4(3A6O)
NEPU2_THEVU
[Raw transfer]




MTT_C_3(1JIB)
NEPU2_THEVU
[Raw transfer]




BCD_A_3(1GVI)
?
[Raw transfer]




MAL_A_2(5A2B)
?
[Raw transfer]




BCD_B_4(1GVI)
?
[Raw transfer]




MAL_A_2(5A2C)
?
[Raw transfer]




SUGAR_D_4(1J0J)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_D_4(1J0I)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_D_4(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_C_3(1J0I)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_A_3(2D2O)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(2D2O)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_D_4(1J0I)
NEPU_GEOSE
[Raw transfer]

-

BCD_C_3(1JL8)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFM)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_C_3(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_B_4(1VFO)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_A_3(1VFO)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VB9)
NEPU2_THEVU
[Raw transfer]

-

BCD_C_3(1G1Y)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFU)
NEPU2_THEVU
[Raw transfer]

-

BCD_D_4(1JL8)
NEPU2_THEVU
[Raw transfer]




BCD_D_4(1G1Y)
NEPU2_THEVU
[Raw transfer]




BCD_D_4(1JL8)
NEPU2_THEVU
[Raw transfer]




SUGAR_B_4(1VFU)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_A_3(1VB9)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFM)
NEPU2_THEVU
[Raw transfer]

-

GD_A_8(3VX0)
AMYA1_ASPOR
[Raw transfer]




69 HHSearch 85.8142% -88 - C1 -1EA9 - ? -
7 PsiBlast_PDB 80.7544% -82 - C1 -1EA9 - ? -
70 HHSearch 79.1139% -47 - C1 -1JL8 3.9 NEPU2_THEVU
71 HHSearch 78.6339% -49 - C1 -1WZL - NEPU2_THEVU -
68 HHSearch 78.2646% 0 - C1 -1J0H - NEPU_GEOSE -
67 HHSearch 77.1846% -1 * C1 *1J0I 4.0 NEPU_GEOSE
6 PsiBlast_PDB 75.0450% -13 - C1 -1J0K 4.4 NEPU_GEOSE
3 PsiBlast_PDB 74.8850% -9 - C1 -1J0H - NEPU_GEOSE -
25 PsiBlast_CBE 74.7750% -10 - C1 -1J0J 5.8 NEPU_GEOSE
2 PsiBlast_PDB 74.7650% -15 - C1 -1GVI 5.5 ?
5 PsiBlast_PDB 74.5850% -11 - C1 -1J0J - NEPU_GEOSE -
58 Fugue 74.4245% -5 - C1 -1SMA - ? -
24 PsiBlast_CBE 74.4250% -9 - C1 -1J0K 4.8 NEPU_GEOSE
4 PsiBlast_PDB 74.0950% -10 - C1 -1J0I 5.1 NEPU_GEOSE
21 PsiBlast_CBE 74.0150% -16 - C1 -1GVI 5.5 ?
22 PsiBlast_CBE 73.6750% -10 - C1 -1J0I 4.0 NEPU_GEOSE
1 PsiBlast_PDB 73.5750% -11 - C1 -1SMA - ? -
33 PsiBlast_CBE 71.2342% -23 - C1 -1JL8 3.9 NEPU2_THEVU
17 PsiBlast_PDB 71.2042% -20 - C1 -1WZK - NEPU2_THEVU -
13 PsiBlast_PDB 70.9542% -23 - C1 -1JL8 4.4 NEPU2_THEVU
41 PsiBlast_CBE 70.5542% -18 - C1 -1VFO 5.8 NEPU2_THEVU
42 PsiBlast_CBE 70.3942% -22 - C1 -1VFM 4.0 NEPU2_THEVU
32 PsiBlast_CBE 70.3342% -19 - C1 -1VB9 5.6 NEPU2_THEVU
30 PsiBlast_CBE 70.2442% -17 - C1 -2D2O 5.8 NEPU2_THEVU
34 PsiBlast_CBE 69.6342% -19 - C1 -1JIB 4.6 NEPU2_THEVU
16 PsiBlast_PDB 69.5142% -20 - C1 -2D2O 5.8 NEPU2_THEVU
38 PsiBlast_CBE 69.3242% -19 - C1 -1VFU 3.6 NEPU2_THEVU
10 PsiBlast_PDB 69.2242% -18 - C1 -3A6O 5.1 NEPU2_THEVU
15 PsiBlast_PDB 69.1842% -18 - C1 -1VB9 6.2 NEPU2_THEVU
40 PsiBlast_CBE 69.1542% -18 - C1 -1VFO 5.1 NEPU2_THEVU
43 PsiBlast_CBE 69.1042% -20 - C1 -1VFM 5.2 NEPU2_THEVU
14 PsiBlast_PDB 69.1042% -18 - C1 -1JIB 3.5 NEPU2_THEVU
39 PsiBlast_CBE 69.0442% -20 - C1 -1VFU 4.4 NEPU2_THEVU
36 PsiBlast_CBE 69.0242% -23 - C1 -1G1Y 3.7 NEPU2_THEVU
19 PsiBlast_PDB 68.7342% -19 - C1 -1G1Y 3.4 NEPU2_THEVU
26 PsiBlast_CBE 68.1042% -18 - C1 -3A6O 6.0 NEPU2_THEVU