@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0978: (2018-01-02 )
MEVLCMVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFSVVEDKQFYHCFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHEDAAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDSGLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTVIFNKSYELYHMDRAKRSSGKASEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLREDFAFATPEFQVLHDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVEMTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]



GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]



GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]



CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]



UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]



ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]



0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]



G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]



BEN_A_4(4EDR)
DNAG_STAAU
[Raw transfer]



BEN_A_4(4EDK)
DNAG_STAAU
[Raw transfer]
31 HHSearch 82.2629% -62 - C4 -2AU3 - DNAG_AQUAE -
7 PsiBlast_PDB 79.4436% -27 - C4 -4EDV 4.3 DNAG_STAAU
3 PsiBlast_PDB 79.3736% -27 - C4 -4EDG 6.5 DNAG_STAAU
4 PsiBlast_PDB 79.2536% -23 - C4 -4EDK 7.2 DNAG_STAAU
5 PsiBlast_PDB 79.1936% -27 - C4 -4EDR 6.8 DNAG_STAAU
6 PsiBlast_PDB 78.8836% -25 - C4 -4EDT 4.7 DNAG_STAAU
36 HHSearch 78.5035% -16 - C4 -4EDK 7.2 DNAG_STAAU
8 PsiBlast_PDB 78.3936% -25 - C4 -4EE1 6.2 DNAG_STAAU
2 PsiBlast_PDB 78.3836% -33 - C4 -4E2K - DNAG_STAAU -
21 Fugue 77.5835% -27 - C4 -4EDK 7.2 DNAG_STAAU
1 PsiBlast_PDB 73.6132% 8 - C4 -2AU3 - DNAG_AQUAE -
32 HHSearch 73.3932% -23 - C4 -5GUJ - DNAG_BACSU -
34 HHSearch 72.4730% -48 - C4 -3B39 - DNAG_ECOLI -
9 PsiBlast_PDB 72.4233% -24 - C4 -5GUJ - DNAG_BACSU -
33 HHSearch 72.3532% -14 - C4 -5VAZ - DNAG_PSEAE -
12 PsiBlast_PDB 71.3330% -53 - C4 -1DDE - DNAG_ECOLI -
11 PsiBlast_PDB 70.5630% -48 - C4 -1DD9 - DNAG_ECOLI -
22 Fugue 70.2431% -44 - C4 -1DD9 - DNAG_ECOLI -
10 PsiBlast_PDB 69.2234% -25 - C4 -5VAZ - DNAG_PSEAE -
35 HHSearch 69.0230% -46 - C4 -1DD9 - DNAG_ECOLI -