@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1047: (2018-01-03 )
MKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEMTEYVFSEEELAEINRIKDTKFGTWDWNYGKSPEFNVRRGTKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGISREEIAEAVVG

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAQ_B_4(5ICL)
?
[Raw transfer]



LAQ_B_4(5ICL)
?
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



LAQ_A_3(5ICL)
?
[Raw transfer]



SH5_B_4(5ICH)
?
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



SH5_A_3(5ICH)
?
[Raw transfer]



ATP_A_3(2ARU)
LPLAN_THEAC
[Raw transfer]



AMP_A_6(3A7A)
LPLA_ECOLI
[Raw transfer]



LPA_A_2(5IBY)
?
[Raw transfer]



LPA_A_2(5IJ6)
?
[Raw transfer]



SH6_A_2(5IDH)
?
[Raw transfer]



SH6_A_2(5IDH)
?
[Raw transfer]



AMP_C_8(3A7A)
LPLA_ECOLI
[Raw transfer]



MPD_A_4(3R07)
LPLAN_THEAC
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



37R_B_6(4TVY)
LPLA_ECOLI
[Raw transfer]



37R_B_5(4TVY)
LPLA_ECOLI
[Raw transfer]
1 PsiBlast_PDB 99.7798% -98 - C4 -1VQZ 2.9 ?
28 HHSearch 83.2897% 9 - C4 -1VQZ 2.9 ?
6 PsiBlast_PDB 71.2139% -32 - C4 -5IJ6 4.0 ?
9 PsiBlast_PDB 69.5734% -52 - C4 -1X2G - LPLA_ECOLI -
24 PsiBlast_CBE 68.8433% -58 - C4 -4TVY 3.5 LPLA_ECOLI
21 PsiBlast_CBE 68.7946% -20 - C4 -5ICL 7.9 ?
4 PsiBlast_PDB 68.7646% -22 - C4 -5ICL 7.8 ?
2 PsiBlast_PDB 68.2446% -20 - C4 -5IBY 3.8 ?
3 PsiBlast_PDB 67.7146% -21 - C4 -5ICH 8.4 ?
7 PsiBlast_PDB 67.6234% -40 - C4 -3A7A 6.2 LPLA_ECOLI
8 PsiBlast_PDB 67.0234% -36 - C4 -3A7R 10.3 LPLA_ECOLI
25 PsiBlast_CBE 66.9433% -44 - C4 -4TVW - LPLA_ECOLI -
30 HHSearch 66.7747% 8 - C4 -5ICL 7.9 ?
26 PsiBlast_CBE 66.2933% -43 - C4 -4TVW - LPLA_ECOLI -
5 PsiBlast_PDB 65.8746% -15 - C4 -5IDH 4.4 ?
27 PsiBlast_CBE 65.8633% -44 - C4 -4TVW - LPLA_ECOLI -
11 PsiBlast_PDB 65.8533% -41 - C4 -4TVW - LPLA_ECOLI -
23 PsiBlast_CBE 65.8234% -34 - C4 -3A7A 5.4 LPLA_ECOLI
22 PsiBlast_CBE 65.6946% -23 - C4 -5ICH 8.9 ?
10 PsiBlast_PDB 65.2934% -46 - C4 -1X2H - LPLA_ECOLI -
31 HHSearch 65.1247% 7 - C4 -5IDH 4.4 ?
33 HHSearch 54.6732% 26 - C4 -3A7R 10.3 LPLA_ECOLI