@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1048: (2018-01-03 )
MALEVIMPKAGVDMTEGQIVQWNKKVGEFVKEGEILLEIMTDKVSMELEAEEDGYLIAILKGDGETVPVTEVIGYLGEERENIPTAGAASPEASPVPVASTSNDDGKSDDAFDIVVIGGGPAGYVAAIKAAQFGGKVALVEKSELGGTCLNRGCIPTKTYLHNAEIIENIGHAANRGIVIENPNFTVDMEKLLETKSKVVNTLVGGVAGLLRSYGVTVHKGIGTITKDKNVLVNGSELLETKKIILAGGSKVSKINVPGMESPLVMTSDDILEMNEVPESLVIIGGGVVGIELGQAFMTFGSKVTVIEMMDRIVPAMDVEVSKNLRLILERKGMTILTGTKLQEIIEENGQLRIKVEGKDDIIASKALLSIGRMPDLEGIGEVEFELDRGCIKVNEYMETSVPGIYAPGDINGTKMLAHAAFRMGEVSAENALKGNHAVAKLNLTPAAIYTLPEVAAVGLTEEQAREKYDVAIGKFNFAANGRAIASDAAQGFVKVIADKKYGEILGVHIIGPAAAELINEASSIIEMEITVEEMLKTIHGHPTYSEVMYEAFADVLGMAIHSPKKK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




3II_A_4(3II4)
DLDH_MYCTU
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




MES_A_4(4JDR)
DLDH_ECOLI
[Raw transfer]




EDO_B_7(3URH)
?
[Raw transfer]




MES_A_5(4JDR)
DLDH_ECOLI
[Raw transfer]




117 HHSearch 89.7241% -32 - C2 -2EQ6 - ? -
32 PsiBlast_CBE 88.9741% -28 - C2 -2EQ6 13.2 ?
118 HHSearch 88.7641% -31 - C2 -2EQ8 - ? -
4 PsiBlast_PDB 88.6841% -26 - C2 -2EQ9 - ? -
26 PsiBlast_CBE 88.2641% -26 - C2 -2EQ9 - ? -
25 PsiBlast_CBE 88.1941% -26 - C2 -2EQ9 - ? -
24 PsiBlast_CBE 88.1341% -27 - C2 -2EQ9 - ? -
23 PsiBlast_CBE 87.5741% -28 - C2 -2EQ9 - ? -
28 PsiBlast_CBE 87.0841% -27 - C2 -2EQ9 - ? -
27 PsiBlast_CBE 87.0641% -24 - C2 -2EQ9 - ? -
22 PsiBlast_CBE 87.0541% -26 - C2 -2EQ9 - ? -
3 PsiBlast_PDB 87.0141% -26 - C2 -2EQ8 - ? -
2 PsiBlast_PDB 86.9041% -27 - C2 -2EQ6 - ? -
30 PsiBlast_CBE 86.6741% -28 - C2 -2EQ8 - ? -
29 PsiBlast_CBE 86.5741% -28 - C2 -2EQ8 - ? -
31 PsiBlast_CBE 85.8841% -27 - C2 -2EQ8 - ? -
125 HHSearch 84.2738% -9 - C2 -3URH 2.8 ?
124 HHSearch 82.8938% -12 * C2 *3URH - ? -
16 PsiBlast_PDB 82.1638% -9 - C2 -5TR3 - ? -
98 PsiBlast_CBE 81.8638% -5 - C2 -4M52 - DLDH_MYCTU -
21 PsiBlast_CBE 81.6240% -13 - C2 -3LAD 12.5 DLDH_AZOVI
121 HHSearch 77.8339% 4 - C2 -2QAE 12.6 DLDH_TRYCR