@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1065: (2018-01-04 )
MGLKHLEDVTYFRLNNEINRPVNGQIMLHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIKDQNFQFKSFMAAYKFYNQYALKTNDGEYYLENMEDRVFFNALYFADGNEAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDITEKYDELVANPNIRKTKIKARDLETEISKLQQESGYPYVVNIDTANRANPVDGKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRTFTDDGGEVGANQCESCVI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DTP_A_3(1PEU)
RIR3_SALTY
[Raw transfer]



DTP_A_3(1PEU)
RIR3_SALTY
[Raw transfer]



TTP_A_3(1PEQ)
RIR3_SALTY
[Raw transfer]



TTP_A_3(1PEQ)
RIR3_SALTY
[Raw transfer]



DCP_A_3(1PEO)
RIR3_SALTY
[Raw transfer]
32 HHSearch 75.7050% -24 - C1 -1PEU 5.3 RIR3_SALTY
2 PsiBlast_PDB 75.3949% -23 - C1 -1PEO 4.3 RIR3_SALTY
4 PsiBlast_PDB 74.9549% -24 - C1 -1PEU 5.3 RIR3_SALTY
1 PsiBlast_PDB 74.9049% -24 - C1 -1PEM - RIR3_SALTY -
21 PsiBlast_CBE 74.4749% -23 - C1 -2BQ1 - RIR3_SALTY -
33 HHSearch 74.4650% -25 - C1 -1PEQ 5.8 RIR3_SALTY
5 PsiBlast_PDB 74.3449% -27 - C1 -2BQ1 - RIR3_SALTY -
3 PsiBlast_PDB 73.9749% -25 - C1 -1PEQ 5.8 RIR3_SALTY
27 Fugue 55.6524% -21 - C1 -3K8T - RIR1_YEAST -
24 Fugue 55.1824% -7 - C1 -2EUD - RIR1_YEAST -
26 Fugue 53.7027% 26 - C1 -5IM3 - ? -
34 HHSearch 52.3026% 12 - C1 -5IM3 - ? -
37 HHSearch 52.2223% 19 * C1 *3K8T - RIR1_YEAST -
38 HHSearch 51.7023% 16 - C1 -1ZYZ - RIR1_YEAST -
39 HHSearch 49.7424% 31 - C1 -2WGH - RIR1_HUMAN -
6 PsiBlast_PDB 49.5426% 26 - C1 -5IM3 - ? -
9 PsiBlast_PDB 48.7824% 26 - C1 -2R1R - RIR1_ECOLI -
15 PsiBlast_PDB 48.4624% 26 - C1 -5CNT - RIR1_ECOLI -
20 PsiBlast_PDB 48.4024% 26 - C1 -1R1R - RIR1_ECOLI -
8 PsiBlast_PDB 48.3624% 29 - C1 -3R1R - RIR1_ECOLI -