@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1100: (2018-01-05 )
MTSTKQHKKVILVGDGAVGSSYAFALVNQGIAQELGIIEIPQLHEKAVGDALDLSHALAFTSPKKIYAAQYSDCADADLVVITAGAPQKPGETRLDLVGKNLAINKSIVTQVVESGFKGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQALAEKLDVDARSVHAYIMGEHGDSEFAVWSHANIAGVNLEEFLKDTQNVQEAELIELFEGVRDAAYTIINKKGATYYGIAVALARITKAILDDENAVLPLSVFQEGQYGVENVFIGQPAVVGAHGIVRPVNIPLNDAETQKMQASAKELQAIIDEAWKNPEFQEASKN

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]



NAI_E_5(1I0Z)
LDHB_HUMAN
[Raw transfer]



NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]



NAI_G_7(1I0Z)
LDHB_HUMAN
[Raw transfer]



NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_B_8(3WSW)
?
[Raw transfer]



LNC_A_9(5LDH)
LDHB_PIG
[Raw transfer]



LNC_B_13(5LDH)
LDHB_PIG
[Raw transfer]



NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_A_8(1A5Z)
LDH_THEMA
[Raw transfer]



NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_D_13(3WSW)
?
[Raw transfer]



NAD_A_8(1A5Z)
LDH_THEMA
[Raw transfer]



NAD_C_11(3WSW)
?
[Raw transfer]



NAD_A_5(3WSW)
?
[Raw transfer]



NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]



NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]



OXM_H_8(1I0Z)
LDHB_HUMAN
[Raw transfer]



OXM_F_6(1I0Z)
LDHB_HUMAN
[Raw transfer]



OXM_C_13(3VPH)
LDH_THECA
[Raw transfer]



OXM_D_9(2XXJ)
LDH_THET8
[Raw transfer]



OXM_A_5(2V7P)
LDH_THET8
[Raw transfer]



OXM_B_9(3VPH)
LDH_THECA
[Raw transfer]



OXM_B_6(2XXJ)
LDH_THET8
[Raw transfer]



OXM_A_5(3VPH)
LDH_THECA
[Raw transfer]



OXM_C_9(2V7P)
LDH_THET8
[Raw transfer]



OXM_B_7(2V7P)
LDH_THET8
[Raw transfer]



OXM_D_11(2V7P)
LDH_THET8
[Raw transfer]



OXM_D_15(3VPH)
LDH_THECA
[Raw transfer]



MPD_A_6(4M1Q)
?
[Raw transfer]
25 PsiBlast_CBE 97.0467%-134 - C5 -3VKV - LDH_LACCA -
2 PsiBlast_PDB 96.9167%-134 - C5 -2ZQZ - LDH_LACCA -
21 PsiBlast_CBE 96.6367%-132 - C5 -3VKV - LDH_LACCA -
3 PsiBlast_PDB 95.9267%-137 - C5 -3VKV - LDH_LACCA -
22 PsiBlast_CBE 95.6967%-128 - C5 -3VKV - LDH_LACCA -
23 PsiBlast_CBE 95.6767%-134 - C5 -3VKV - LDH_LACCA -
36 PsiBlast_CBE 95.6066%-124 - C5 -3VPF - LDH_LACCA -
1 PsiBlast_PDB 95.4667%-134 - C5 -2ZQY - LDH_LACCA -
37 PsiBlast_CBE 95.0366%-123 - C5 -3VPF - LDH_LACCA -
6 PsiBlast_PDB 94.2366%-130 - C5 -3VPF - LDH_LACCA -
46 PsiBlast_CBE 93.5160%-116 - C5 -1EZ4 9.2 LDH_LACPE
24 PsiBlast_CBE 93.4167%-133 - C5 -3VKV - LDH_LACCA -
44 PsiBlast_CBE 93.2760%-116 - C5 -1EZ4 8.7 LDH_LACPE
131 HHSearch 93.2064%-132 - C5 -3VKU - LDH_LACCA -
5 PsiBlast_PDB 92.4066%-133 - C5 -3VKU - LDH_LACCA -
7 PsiBlast_PDB 91.4760%-125 - C5 -1EZ4 9.0 LDH_LACPE
45 PsiBlast_CBE 90.7560%-122 - C5 -1EZ4 8.7 LDH_LACPE
148 HHSearch 88.3244%-143 - C5 -1A5Z 6.3 LDH_THEMA
77 PsiBlast_CBE 87.2644%-146 - C5 -1A5Z 6.3 LDH_THEMA
4 PsiBlast_PDB 86.9066%-115 - C5 -1LLC - LDH_LACCA -
134 HHSearch 86.6561% -32 - C5 -1EZ4 8.2 LDH_LACPE
47 PsiBlast_CBE 84.7459% -51 - C5 -3D4P 7.7 LDH1_STAAC
10 PsiBlast_PDB 84.4359% -44 - C5 -3H3J 8.1 LDH1_STAAC
9 PsiBlast_PDB 84.3559% -52 - C5 -3D4P 7.2 LDH1_STAAC
48 PsiBlast_CBE 84.1559% -43 - C5 -3H3J 8.3 LDH1_STAAC
56 PsiBlast_CBE 82.3453% -50 - C5 -3PQF 6.8 LDH_BACSU
57 PsiBlast_CBE 81.9853% -53 - C5 -3PQF 5.7 LDH_BACSU
71 PsiBlast_CBE 81.0147% -47 - C5 -3WSW 5.2 ?
65 PsiBlast_CBE 80.0053% -84 - C5 -2LDB 6.9 LDH_GEOSE
67 PsiBlast_CBE 79.9953% -84 - C5 -2LDB 7.0 LDH_GEOSE
66 PsiBlast_CBE 79.9853% -84 - C5 -2LDB 6.7 LDH_GEOSE
16 PsiBlast_PDB 79.9553% -84 - C5 -2LDB 7.0 LDH_GEOSE
102 PsiBlast_CBE 79.8843% -99 - C5 -3VPH 2.6 LDH_THECA
70 PsiBlast_CBE 79.6547% -45 - C5 -3WSW 5.3 ?
72 PsiBlast_CBE 79.6447% -47 - C5 -3WSW 5.0 ?
69 PsiBlast_CBE 79.5847% -45 - C5 -3WSW 5.4 ?
101 PsiBlast_CBE 78.8543% -98 - C5 -3VPH 2.3 LDH_THECA
100 PsiBlast_CBE 78.7243% -99 - C5 -3VPH 2.3 LDH_THECA
99 PsiBlast_CBE 78.7143%-100 - C5 -3VPH 2.2 LDH_THECA
93 PsiBlast_CBE 78.3043% -94 - C5 -2V7P 3.2 LDH_THET8
86 PsiBlast_CBE 77.6843% -95 - C5 -2XXJ 3.6 LDH_THET8
88 PsiBlast_CBE 77.4943% -96 - C5 -2XXJ 3.3 LDH_THET8
95 PsiBlast_CBE 77.0343% -95 - C5 -2V7P 2.8 LDH_THET8
92 PsiBlast_CBE 76.4943%-102 - C5 -2V7P 2.9 LDH_THET8
94 PsiBlast_CBE 76.0943%-106 - C5 -2V7P 2.2 LDH_THET8
78 PsiBlast_CBE 74.2739% -32 - C5 -1I0Z 7.9 LDHB_HUMAN
79 PsiBlast_CBE 71.6439% -24 - C5 -1I0Z 7.8 LDHB_HUMAN