@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1106: (2018-01-05 )
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQINQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ACP_B_7(5C93)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ADP_B_3(4ZKI)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ATP_A_5(5LFK)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ANP_A_3(1ID0)

[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
47 HHSearch 87.8366% - - C2 -4I5S - ? -
1 PsiBlast_PDB 84.8369% - - C2 -4I5S - ? -
70 Fugue 84.3269% - - C2 -4I5S - ? -
5 PsiBlast_PDB 59.3154% 34 - C2 -5C93 7.2 ?
52 HHSearch 59.1356% 38 - C2 -5C93 7.2 ?
51 HHSearch 58.4554% 38 - C2 -4U7O 9.0 ?
3 PsiBlast_PDB 57.8253% 39 - C2 -4U7O 9.0 ?
4 PsiBlast_PDB 57.3753% 39 - C2 -4ZKI - ? -
23 PsiBlast_CBE 51.6254% 37 - C2 -5C93 7.5 ?
13 PsiBlast_PDB 50.2741%-171 - C1 -4MN5 - WALK_STAAU -
22 PsiBlast_CBE 50.2553% 34 - C2 -4U7O 9.5 ?
53 HHSearch 50.2031%-112 - C2 -4BIX - CPXA_ECOLI -
72 Fugue 49.9625%-118 * C2 *1ID0 7.0
21 PsiBlast_CBE 49.4353% 34 - C2 -4ZKI 6.9 ?
50 HHSearch 49.1631% -99 - C2 -4BIV - CPXA_ECOLI -
17 PsiBlast_PDB 49.0929% -79 - C2 -5LFK 7.5 ?
20 PsiBlast_PDB 49.0129% -86 - C2 -4BIZ - CPXA_ECOLI -
6 PsiBlast_PDB 48.8348% -67 - C2 -3SL2 7.7
15 PsiBlast_PDB 48.5729%-100 - C2 -4BIX - CPXA_ECOLI -
2 PsiBlast_PDB 47.8053% - - C2 -4U7N - ? -
7 PsiBlast_PDB 47.7132% 27 - C2 -2C2A 7.6 ?
9 PsiBlast_PDB 47.3332% 25 - C2 -4JAV 9.0 ?
11 PsiBlast_PDB 45.4832% 21 - C2 -4JAU 6.9 ?
8 PsiBlast_PDB 44.8532% 27 - C2 -3DGE 6.9 ?
10 PsiBlast_PDB 43.8232% 17 - C2 -4JAS 9.3 ?
25 PsiBlast_CBE 43.5332% 29 - C2 -3DGE 8.2 ?
58 HHSearch 40.4332% 82 - C2 -2C2A 7.6 ?
57 HHSearch 39.4632% 78 - C2 -4JAV 9.0 ?