@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1141: (2018-01-06 )
MKRCDTVATATKKKKSTVKKNLVIVESPAKAKTIEKYLGRNYKVLASVGHIRDLKKSSMSVDIENNYEPQYINIRGKGPLINDLKKEAKKANKVFLASDPDREGEAISWHLAHILNLDENDANRVVFNEITKDAVKNAFKEPRKIDMDLVDAQQARRILDRLVGYSISPILWKKVKKGLSAGRVQSIALKLIIDRENEINAFQPEEYWTVDAVFKKGTKQFHASFYGVDGKKMKLTSNNEVKEVLSRLTSKDFSVDQVDKKERKRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGSGVQGLITYMRTDSTRISPVAQNEAASFITDRFGSKYSKHGSKVKNASGAQDAHEAIRPSSVFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMAVKLSQKGVQFAANGSQVKFDGYLAIYNDSDKNKMLPDMVVGDVVKQVNSKPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVRLAAKRFEPTELGEIVNKLIVEYFPDIVNVTFTAEMEGKLDDVEVGKEQWRRVIDAFYKPFSKEVAKAEEEMEKIQIKDEPAGFDCEVCGSPMVIKLGRFGKFYACSNFPDCHHTQAIVKEIGVECPSCHQGQIIERKTKRNRLFYGCNRYPECEFTSWDKPVGRDCPKCGNFLMEKKVRGGGKQVVCSKGDYEEEKIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_B_2(3PX7)
TOP1_ECOLI
[Raw transfer]
-
1 PsiBlast_PDB 76.3338% 38 - C3 -4RUL - TOP1_ECOLI -
33 HHSearch 73.7142% -19 - C3 -2GAJ - TOP1_THEMA -
34 HHSearch 70.3742% -17 - C- -2GAI - TOP1_THEMA -
25 Fugue 69.9642% -15 - C- -2GAI - TOP1_THEMA -
36 HHSearch 69.9237% 26 - C3 -5D5H - TOP1_MYCTU -
14 PsiBlast_PDB 69.4742% 9 - C3 -2GAJ - TOP1_THEMA -
8 PsiBlast_PDB 68.8742% 36 - C3 -1CY4 3.3 TOP1_ECOLI
10 PsiBlast_PDB 68.8142% 42 - C3 -1MW8 10.9 TOP1_ECOLI
12 PsiBlast_PDB 68.8042% 37 - C3 -3PX7 14.5 TOP1_ECOLI
11 PsiBlast_PDB 68.2542% 42 - C3 -1MW9 - TOP1_ECOLI -
5 PsiBlast_PDB 68.2442% 40 - C3 -1CY6 4.0 TOP1_ECOLI
2 PsiBlast_PDB 68.1842% 35 - C3 -1ECL - TOP1_ECOLI -
37 HHSearch 67.9545% 52 - C3 -1MW9 - TOP1_ECOLI -
15 PsiBlast_PDB 67.7637% 37 - C3 -5D5H - TOP1_MYCTU -
9 PsiBlast_PDB 67.5942% 39 - C3 -3PWT - TOP1_ECOLI -
6 PsiBlast_PDB 66.8942% 41 - C3 -1CY8 4.0 TOP1_ECOLI
4 PsiBlast_PDB 65.9742% 43 - C3 -1CY2 4.2 TOP1_ECOLI
13 PsiBlast_PDB 65.4242% 10 - C- -2GAI - TOP1_THEMA -
3 PsiBlast_PDB 63.3342% 62 - C3 -1CY1 3.7 TOP1_ECOLI
7 PsiBlast_PDB 62.6142% 61 - C3 -1CY0 - TOP1_ECOLI -