@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1166: (2018-01-06 )
MAFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAVGHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMVAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNELRDVKALAQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDMLTLIEKASQEYDEQKALEMAEKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMIPGMANNPALQNMKVDERQIARKRAIVSSMTPEERENPDLLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKNMPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMANKMKKAKKKRK

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GCP_D_13(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_B_6(5L3V)
SRP54_SULSO
[Raw transfer]




GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_A_3(5L3V)
SRP54_SULSO
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GNP_B_14(5L3Q)
SRP54_HUMAN
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GNP_D_25(5L3Q)
SRP54_HUMAN
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GCP_B_7(5L3R)
SR54C_ARATH
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




OXY_A_3(1LS1)
SRP54_THEAQ
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




EDO_A_11(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




AMP_A_9(5L3Q)
SRP54_HUMAN
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




AMP_C_22(5L3Q)
SRP54_HUMAN
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




21 PsiBlast_CBE 89.6148% -85 - C7 -2XXA - SRP54_ECOLI -
1 PsiBlast_PDB 88.7648% -78 - C7 -2XXA - SRP54_ECOLI -
93 HHSearch 87.5952%-112 - C7 -4C7O 4.0 SRP54_ECOLI
24 PsiBlast_CBE 87.2351%-112 - C7 -4C7O 4.0 SRP54_ECOLI
2 PsiBlast_PDB 86.5246% -86 - C7 -2FFH - SRP54_THEAQ -
91 HHSearch 86.0735% -80 - C7 -3DM5 Error SRP54_PYRFU
8 PsiBlast_PDB 85.9134% -80 - C7 -3DM5 Error SRP54_PYRFU
26 PsiBlast_CBE 85.1934% -85 - C7 -3DM5 7.0 SRP54_PYRFU
92 HHSearch 84.9335% -84 - C7 -3DM5 7.0 SRP54_PYRFU
4 PsiBlast_PDB 84.2151%-112 - C7 -4C7O 3.0 SRP54_ECOLI
16 PsiBlast_PDB 83.2348%-115 - C7 -1JPN 7.4 SRP54_THEAQ
17 PsiBlast_PDB 82.4248%-111 - C7 -1RY1 - SRP54_THEAQ -
19 PsiBlast_PDB 82.3048%-119 - C7 -1FFH - SRP54_THEAQ -
32 PsiBlast_CBE 82.2948%-118 - C7 -1JPN 6.5 SRP54_THEAQ
41 PsiBlast_CBE 82.1348%-113 - C7 -1NG1 7.4 SRP54_THEAQ
15 PsiBlast_PDB 81.8948%-111 - C7 -1JPJ 7.6 SRP54_THEAQ
34 PsiBlast_CBE 81.8248%-116 - C7 -3NG1 3.7 SRP54_THEAQ
20 PsiBlast_PDB 81.8148%-119 - C7 -3ZN8 - SRP54_THEAQ -
107 HHSearch 81.6150%-121 - C7 -5L3R 2.8 SR54C_ARATH
7 PsiBlast_PDB 81.5038% 0 - C- -3NDB - SRP54_METJA -
35 PsiBlast_CBE 81.4348%-116 - C7 -2J7P 9.7 SRP54_THEAQ
25 PsiBlast_CBE 81.3350%-120 - C7 -5L3R 2.8 SR54C_ARATH
36 PsiBlast_CBE 81.2048%-110 - C7 -2J7P 9.6 SRP54_THEAQ
5 PsiBlast_PDB 80.8750%-120 - C7 -5L3R 2.9 SR54C_ARATH
33 PsiBlast_CBE 80.8448%-116 - C7 -3NG1 3.7 SRP54_THEAQ
42 PsiBlast_CBE 80.6048%-106 - C7 -2NG1 6.2 SRP54_THEAQ
40 PsiBlast_CBE 80.4048%-115 - C7 -1OKK 2.9 SRP54_THEAQ
18 PsiBlast_PDB 77.0449% -70 - C7 -1LS1 3.2 SRP54_THEAQ
31 PsiBlast_CBE 75.3949% -55 - C7 -1O87 7.1 SRP54_THEAQ
11 PsiBlast_PDB 75.2249% -63 - C7 -1O87 7.3 SRP54_THEAQ
45 PsiBlast_CBE 72.9831%-120 - C7 -5L3Q 3.8 SRP54_HUMAN
46 PsiBlast_CBE 72.7540% -63 - C7 -5L3V 8.5 SRP54_SULSO
47 PsiBlast_CBE 72.0040% -57 - C7 -5L3V 7.4 SRP54_SULSO
44 PsiBlast_CBE 71.5631%-121 - C7 -5L3Q 3.8 SRP54_HUMAN
9 PsiBlast_PDB 71.4649% -52 - C7 -1RJ9 9.6 SRP54_THEAQ
102 HHSearch 62.4433% -12 - C7 -5L3R 8.5 CFTSY_ARATH
96 HHSearch 60.2134% 37 - C7 -3E70 6.9 ?
52 PsiBlast_CBE 60.1035% -13 - C7 -3E70 6.9 ?
70 PsiBlast_CBE 59.0339% -59 - C7 -1VMA 3.9 ?
66 PsiBlast_CBE 54.5240% -34 - C7 -5L3R 8.5 CFTSY_ARATH
65 PsiBlast_CBE 54.1840% -34 - C7 -5L3R 9.0 CFTSY_ARATH
67 PsiBlast_CBE 54.0334% -12 - C7 -4C7O 7.3 FTSY_ECOLI
68 PsiBlast_CBE 52.5434% -10 - C7 -4C7O 7.0 FTSY_ECOLI
80 PsiBlast_CBE 47.1531% -23 - C7 -1OKK 7.4 FTSY_THEAQ
73 PsiBlast_CBE 46.8131% -25 - C7 -1RJ9 2.9 FTSY_THEAQ
81 PsiBlast_CBE 46.4831% -22 - C7 -2J7P 2.9 FTSY_THEAQ
82 PsiBlast_CBE 46.3631% -22 - C7 -2J7P 2.9 FTSY_THEAQ
83 PsiBlast_CBE 46.3131% -35 - C7 -2IYL 5.6 FTSY_THEAQ
77 PsiBlast_CBE 45.0331% -25 - C7 -2Q9B 4.5 FTSY_THEAQ