@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1179: (2018-01-06 )
MQKNIYFVVLDLHTTDRDKIIQLFKDWTDYSAKLVEGELVKKDGQNALFPPSDTGETVGLNPHRLTLTFGVSASFLKRMNLENKRPRLFRDLPLFPKEQLREKYTGGDIVIHACADDEQIAFHAIRNLIRKGRNAVPLRWSQSGFAAIGDRMETPWNLFGFKDGTANPTKEQDFDRVIWADSKDWMENGSYMAVRRIQMFLETWDRTSLEEQENTFGRYKESGAPFGKKNEFDEVDLSLLPDDSHVCLAKEVDKPLLRRSYSYSDGIDEKTGQFDTGLLFISFQKDPDNFVKVQTNLGATDKMNEYITHIGSGLFTCFGGVEKGGYIGQKLLEG

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_3(4GRC)
?
[Raw transfer]




PP9_A_3(2Y4E)
EFEB_ECOLI
[Raw transfer]




HEM_B_4(5JXU)
?
[Raw transfer]




HEM_A_3(4GRC)
?
[Raw transfer]




PP9_B_7(2Y4E)
EFEB_ECOLI
[Raw transfer]




PG4_B_23(2Y4D)
EFEB_ECOLI
[Raw transfer]




PG4_A_10(2Y4D)
EFEB_ECOLI
[Raw transfer]




OXY_A_4(4GS1)
?
[Raw transfer]




OXY_B_6(5MAP)
?
[Raw transfer]




OXY_B_6(5MJH)
?
[Raw transfer]




OXY_B_7(4GS1)
?
[Raw transfer]




OXY_A_4(5FW4)
DYP_THEFY
[Raw transfer]




OXY_A_4(4GS1)
?
[Raw transfer]




OXY_B_6(5FW4)
DYP_THEFY
[Raw transfer]




OXY_B_7(4GS1)
?
[Raw transfer]




32 HHSearch 81.4946% 14 - C3 -4GRC 11.8 ?
1 PsiBlast_PDB 80.4546% 9 - C3 -4GRC 11.7 ?
30 PsiBlast_CBE 76.8834% 18 - C3 -5JXU 12.0 ?
10 PsiBlast_PDB 76.2134% 16 - C3 -5JXU - ? -
8 PsiBlast_PDB 75.6636% 21 - C3 -3O72 - EFEB_ECO57 -
35 HHSearch 75.3235% 12 - C3 -5JXU - ? -
34 HHSearch 75.3036% 15 - C3 -3O72 - EFEB_ECO57 -
39 HHSearch 75.2739% 20 - C3 -5MAP - ? -
21 PsiBlast_CBE 75.1336% 12 - C3 -4GT2 - ? -
37 HHSearch 75.1035% 29 - C3 -4GS1 3.0 ?
24 PsiBlast_CBE 74.9236% 9 - C3 -5MJH 2.8 ?
2 PsiBlast_PDB 74.6536% 15 - C3 -4GT2 - ? -
23 PsiBlast_CBE 74.5436% 16 - C3 -4GT2 - ? -
38 HHSearch 74.4839% 20 - C3 -5MJH - ? -
3 PsiBlast_PDB 74.3536% 16 - C3 -5MJH - ? -
33 HHSearch 74.1436% 14 - C3 -2Y4F - EFEB_ECOLI -
28 PsiBlast_CBE 74.1435% 12 - C3 -5MAP 3.0 ?
26 PsiBlast_CBE 74.1236% 25 - C3 -2Y4D 2.2 EFEB_ECOLI
22 PsiBlast_CBE 73.9636% 18 * C3 *4GT2 - ? -
4 PsiBlast_PDB 73.6236% 26 - C3 -2Y4D 2.4 EFEB_ECOLI
36 HHSearch 73.1435% 26 - C3 -4GS1 3.2 ?
29 PsiBlast_CBE 72.0935% 31 - C3 -5FW4 2.8 DYP_THEFY
9 PsiBlast_PDB 71.1035% 31 - C3 -5FW4 2.9 DYP_THEFY
11 PsiBlast_PDB 70.6834% 12 - C3 -4GS1 3.0 ?
31 PsiBlast_CBE 69.0734% 15 - C3 -4GS1 3.2 ?