@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1211: (2018-01-07 )
MALNIENIIAEIKEASILELNDLVKAIEEEFGVTAAAPVAVAAADAADAGAAKDSFDVELTSAGDKKVGVIKVVREITGLGLKEAKELVDGAPALVKEGVATAEAEEIKAKLEEAGASVTLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TBR_A_5(1DD4)
?
[Raw transfer]



TBR_A_6(1DD4)
?
[Raw transfer]
55 Fugue 72.4561% 41 - C3 -1DD3 - RL7_THEMA -
3 PsiBlast_PDB 71.7059% 47 - C3 -1DD3 - RL7_THEMA -
4 PsiBlast_PDB 71.0859% 37 - C3 -1DD4 4.9 ?
21 PsiBlast_CBE 70.6459% 31 - C3 -1DD4 5.5 ?
32 HHSearch 69.6461% 41 - C3 -1DD3 - RL7_THEMA -
2 PsiBlast_PDB 67.3051% -94 - C3 -1RQV - RL7_ECOLI -
6 PsiBlast_PDB 65.6561%-140 - C3 -1CTF - RL7_ECOLI -
1 PsiBlast_PDB 63.4551%-104 - C3 -1RQU - RL7_ECOLI -
56 Fugue 60.3267% -34 - C3 -1DD3 - RL7_THEMA -
5 PsiBlast_PDB 60.1361%-109 - C3 -1RQS - RL7_ECOLI -
35 HHSearch 55.8660% 15 - C3 -1CTF - RL7_ECOLI -
29 HHSearch 55.6752% 12 * C3 *1RQU - RL7_ECOLI -
7 PsiBlast_PDB 51.9862% - - C3 -2BCW - RL7_ECOLI -
38 HHSearch 51.9063% - - C3 -2BCW - RL7_ECOLI -
36 HHSearch 51.6960% 27 - C3 -1RQS - RL7_ECOLI -
27 HHSearch 49.7431% - - C3 -2FTC - RM12_BOVIN -
49 HHSearch 45.2531%-175 - C3 -4PC3 - EFTS_ECOLI -
40 HHSearch 43.8351%-198 - C3 -1DD4 - ? -
48 HHSearch 43.3431%-150 - C3 -1EFU - EFTS_ECOLI -
13 PsiBlast_PDB 42.2036%-172 - C3 -1Z7P - ? -