@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1216: (2018-01-07 )
MKHLLSYFKPYIKESILAPLFKLLEAVFELLVPMVIAGIVDQSLPQGDQGHLWMQIGLLLIFAVIGVLVALIAQFYSAKAAVGSAKELTNDLYRHILSLPKDSRDRLTTSSLVTRLTSDTDQIQTGINQFLRLFLRAPIIVFGAIFMAYRISAELTFWFLVLVAILTIVIVGLSRLVNPFYSSLRKKTDQLVQETRQQLQGMRVIRAFGQEKRELQIFQTLNQVYARLQEKTGFWSSLLTPLTYLIVNGTLLVIIWQGYISIQGGVLSQGALIALINYLLQILVELVKLAMLINSLNQSYISVKRIEEVFVEAPEDIHSELEQKQATRDKVLQVQELTFTYPDAAQPSLRYISFDMTQGQILGIIGGTGSGKSSLVQLLLGLYPVDKGNIDLYQNGRSPLNLEQWRSWIAYVPQKVELFKGTIRSNLTLGFNQEVSDQELWQALEIAQAKDFVSEKEGLLDALVEAGGRNFSGGQKQRLSIARAVLRQAPFLILDDATSALDTITESKLLKAIRENFPNTSLILISQRTSTLQMADQILLLEKGELLAVGKHDDLMKSSQVYCEINASQHGKED

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(3QF4)
?
[Raw transfer]



ANP_A_3(4Q4A)
?
[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ADP_B_3(5L22)
?
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]



ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]
83 HHSearch 88.4533% - - C1 -4Q4H - ? -
3 PsiBlast_PDB 88.3733% - - C1 -4Q4H - ? -
1 PsiBlast_PDB 86.8233% -39 * C1 *3QF4 6.4 ?
4 PsiBlast_PDB 85.9533% -38 - C1 -4Q4J - ? -
2 PsiBlast_PDB 85.6533% -37 - C1 -4Q4A 5.9 ?
88 HHSearch 77.0324% -67 - C1 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 75.7126% - - C1 -3B5Z 2.3 MSBA_SALTY
6 PsiBlast_PDB 75.7026% - - C1 -3B5Y - MSBA_SALTY -
90 HHSearch 74.1524% -38 - C1 -5MKK - ? -
82 HHSearch 73.2324% -62 - C1 -5MKK - ? -
65 Fugue 73.2324% -34 - C1 -3B60 - MSBA_SALTY -
78 HHSearch 73.0925% -10 - C1 -4AYX - ABCBA_HUMAN -
77 HHSearch 72.6125% -14 - C1 -4AYT - ABCBA_HUMAN -
13 PsiBlast_PDB 72.4526% -16 - C1 -2ONJ - Y1866_STAAM -
12 PsiBlast_PDB 72.3326% -18 - C1 -2HYD - Y1866_STAAM -
5 PsiBlast_PDB 72.3025% - - C1 -3B5W - MSBA_ECOLI -
75 HHSearch 72.1324% -34 - C1 -3B60 - MSBA_SALTY -
9 PsiBlast_PDB 71.4824% - - C1 -3B5X - MSBA_VIBCH -
8 PsiBlast_PDB 71.4426% -12 - C1 -3B60 - MSBA_SALTY -
14 PsiBlast_PDB 71.3926% -19 - C1 -4A82 - Y1866_STAAM -