@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1239: (2018-01-08 )
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKEDYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFTGTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHIDSFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKPDKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQNDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWAVNTI

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_6(1W9X)
?
[Raw transfer]
-
SUGAR_A_10(1E3Z)
AMY_BACAM
[Raw transfer]
-
GLC_A_3(2D3N)
AMT6_BACS7
[Raw transfer]



SUGAR_A_2(2GJP)
AMT6_BACS7
[Raw transfer]
-
TRS_A_7(1E40)
AMY_BACAM
[Raw transfer]



SUGAR_A_2(3BCD)
?
[Raw transfer]
-
GD_A_8(3VX0)
AMYA1_ASPOR
[Raw transfer]



SUGAR_A_2(2D3L)
AMT6_BACS7
[Raw transfer]
-
SUGAR_A_2(2D3N)
AMT6_BACS7
[Raw transfer]
-
SUGAR_A_2(1WPC)
AMT6_BACS7
[Raw transfer]
-
SUGAR_A_2(3BC9)
?
[Raw transfer]
-
SUGAR_A_2(3BC9)
?
[Raw transfer]
-
GLY_A_3(4UZU)
AMY_GEOSE
[Raw transfer]



SUGAR_A_2(3BC9)
?
[Raw transfer]
-
ACI_A_7(1E3Z)
AMY_BACAM
[Raw transfer]
1 PsiBlast_PDB 94.8650% -59 - C1 -1HVX - AMY_GEOSE -
2 PsiBlast_PDB 93.8850% -61 - C1 -4UZU 3.0 AMY_GEOSE
76 HHSearch 89.4447% -51 - C1 -1UD3 - ? -
16 PsiBlast_PDB 88.8747% -33 - C1 -1OB0 - AMY_BACLI -
11 PsiBlast_PDB 88.3748% -35 - C1 -1VJS - AMY_BACLI -
77 HHSearch 88.0647% -53 - C1 -1UD2 - ? -
4 PsiBlast_PDB 87.9249% -7 - C1 -1WPC 10.4 AMT6_BACS7
18 PsiBlast_PDB 87.8447% -31 - C1 -1BLI - AMY_BACLI -
6 PsiBlast_PDB 87.5649% -7 - C1 -2D3N 4.9 AMT6_BACS7
19 PsiBlast_PDB 87.5246% -50 - C1 -1UD3 - ? -
13 PsiBlast_PDB 87.2046% -25 - C1 -1E3Z 3.1 AMY_BACAM (first)
3 PsiBlast_PDB 86.9249% -7 - C1 -1WP6 - AMT6_BACS7 -
5 PsiBlast_PDB 86.5049% -4 - C1 -2D3L 4.6 AMT6_BACS7
20 PsiBlast_PDB 86.2946% -51 - C1 -1UD2 - ? -
15 PsiBlast_PDB 86.0946% -24 - C1 -1E43 - AMY_BACAM (first) -
17 PsiBlast_PDB 85.7846% -21 - C1 -3BH4 - AMY_BACAM -
12 PsiBlast_PDB 85.6946% -24 - C1 -1E3X - AMY_BACAM -
14 PsiBlast_PDB 85.4346% -25 - C1 -1E40 3.1 AMY_BACAM (first)
7 PsiBlast_PDB 84.5548% -2 - C1 -2GJP 10.5 AMT6_BACS7
10 PsiBlast_PDB 84.2148% -7 - C1 -2DIE - ? -
9 PsiBlast_PDB 83.9148% -2 - C1 -1W9X 11.1 ?
78 HHSearch 66.5237% 38 - C1 -3BC9 11.1 ?
94 Fugue 66.2336% 37 - C1 -3BC9 11.2 ?
28 PsiBlast_CBE 62.6034% 42 - C1 -3BC9 10.8 ?
27 PsiBlast_CBE 61.9934% 43 - C1 -3BCD 5.2 ?