@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1240: (2018-01-08 )
MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRITNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEIGAGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAGMTVDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTIGDYSIELCGGTHVDNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPIIDGRGGGKPDMAMAGGSNQPKIQELLDAVAGKL

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



A5A_A_3(4XEO)
SYAC_HUMAN
[Raw transfer]



A5A_B_9(4XEO)
SYAC_HUMAN
[Raw transfer]



A5A_A_2(4XEM)
SYAC_HUMAN
[Raw transfer]



A5A_A_2(4XEM)
SYAC_HUMAN
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]
22 PsiBlast_CBE 75.5446% 0 - C- -1YFR - SYA_AQUAE -
21 PsiBlast_CBE 75.5446% 0 - C- -1YFS - SYA_AQUAE -
5 PsiBlast_PDB 75.5446% 0 - C- -3HTZ - SYA_AQUAE -
4 PsiBlast_PDB 75.5446% 0 - C- -1YGB - SYA_AQUAE -
3 PsiBlast_PDB 75.5446% 0 - C- -1YFT - SYA_AQUAE -
2 PsiBlast_PDB 75.5446% 0 - C- -1YFS - SYA_AQUAE -
1 PsiBlast_PDB 75.5446% 0 - C- -1YFR - SYA_AQUAE -
6 PsiBlast_PDB 74.5145% 0 - C- -1RIQ - SYA_AQUAE -
18 PsiBlast_PDB 72.2926% 31 - C2 -3WQY - SYA_ARCFU -
19 PsiBlast_PDB 72.0726% 26 - C2 -3WQZ - SYA_ARCFU -
53 HHSearch 66.3648% 28 - C2 -3HXZ - SYA_ECOLI -
50 HHSearch 66.3642% 12 - C2 -5KNN - SYAC_HUMAN -
54 HHSearch 66.3248% 28 - C2 -3HY0 5.7 SYA_ECOLI
14 PsiBlast_PDB 65.8245% 20 - C2 -3HY1 7.6 SYA_ECOLI
48 HHSearch 65.2128% 18 - C2 -2ZTG - SYA_ARCFU -
26 PsiBlast_CBE 65.2145% 24 - C2 -3HXZ - SYA_ECOLI -
11 PsiBlast_PDB 65.1845% 21 - C2 -3HXY 8.9 SYA_ECOLI
27 PsiBlast_CBE 65.1545% 23 - C2 -3HXZ - SYA_ECOLI -
12 PsiBlast_PDB 65.1245% 24 - C2 -3HXZ - SYA_ECOLI -
10 PsiBlast_PDB 65.0945% 19 - C2 -3HXX 10.1 SYA_ECOLI
13 PsiBlast_PDB 64.8945% 23 - C2 -3HY0 5.7 SYA_ECOLI
7 PsiBlast_PDB 64.8345% 25 - C2 -3HXU 8.8 SYA_ECOLI
9 PsiBlast_PDB 64.6945% 23 - C2 -3HXW 8.7 SYA_ECOLI
8 PsiBlast_PDB 64.6745% 22 - C2 -3HXV 5.8 SYA_ECOLI
24 PsiBlast_CBE 64.6245% 24 - C2 -3HY0 5.7 SYA_ECOLI
35 PsiBlast_CBE 58.8839% -6 - C2 -4XEO 9.0 SYAC_HUMAN
17 PsiBlast_PDB 57.3739% 7 - C2 -4XEO 9.1 SYAC_HUMAN
49 HHSearch 56.9242% 11 - C2 -4XEM 8.8 SYAC_HUMAN
15 PsiBlast_PDB 55.9839% 15 - C2 -4XEM 8.8 SYAC_HUMAN