@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1272: (2018-01-08 )
MKVIKVENQVQGGKVAFEILKEKLANGAQTLGLATGSSPLEFYKEIVESNLDFSNLTSVNLDEYVGLDGDNPQSYRYFMQENLFNQKPFKESFLPRGVKDNAEAEVERYNQILADHPVDLQILGIGRNGHIGFNEPGTPFDSQTHLVELDQSTIEANARFFAKIEDVPTQAISMGIKNILDAKSIILFAYGESKAEAIAGTVSGPVTENLPASSLQNHPDVTIIADAEALSLLEK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGP_B_16(1HOR)
NAGB_ECOLI
[Raw transfer]




GLP_B_4(2RI1)
NAGB_STRMU
[Raw transfer]




AGP_A_13(1HOR)
NAGB_ECOLI
[Raw transfer]




F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]




F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]




F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]




GLP_A_3(2RI1)
NAGB_STRMU
[Raw transfer]




FPC_A_10(1FQO)
NAGB_ECOLI
[Raw transfer]




FGS_B_6(2WU1)
NAGB_ECOLI
[Raw transfer]




FGS_A_4(2WU1)
NAGB_ECOLI
[Raw transfer]




TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]




PGA_A_3(2BKV)
NAGB_BACSU
[Raw transfer]




PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]




PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]




21 PsiBlast_CBE 98.4464% -94 - C5 -2RI0 - NAGB_STRMU -
1 PsiBlast_PDB 98.3064% -93 - C5 -2RI0 - NAGB_STRMU -
2 PsiBlast_PDB 97.7264% -95 - C5 -2RI1 3.6 NAGB_STRMU
22 PsiBlast_CBE 97.5364% -91 - C5 -2RI1 3.5 NAGB_STRMU
74 HHSearch 88.2361% -24 - C5 -2RI0 - NAGB_STRMU -
45 Fugue 72.1434% 18 - C5 -1NE7 - GNPI1_HUMAN -
68 HHSearch 71.8245% 29 - C5 -2BKV 3.3 NAGB_BACSU
24 PsiBlast_CBE 71.2144% 25 - C5 -2BKV 3.3 NAGB_BACSU
69 HHSearch 70.8345% 27 - C5 -2BKX 4.6 NAGB_BACSU
73 HHSearch 70.8135% 20 - C5 -1NE7 - GNPI1_HUMAN -
3 PsiBlast_PDB 70.0244% 23 - C5 -2BKV 2.6 NAGB_BACSU
23 PsiBlast_CBE 69.5044% 28 - C5 -2BKX 4.3 NAGB_BACSU
32 PsiBlast_CBE 69.1933% 22 - C5 -1NE7 - GNPI1_HUMAN -
4 PsiBlast_PDB 69.0344% 28 - C5 -2BKX 4.4 NAGB_BACSU
30 PsiBlast_CBE 68.9233% 24 - C5 -1NE7 - GNPI1_HUMAN -
7 PsiBlast_PDB 68.6733% 23 - C5 -1NE7 - GNPI1_HUMAN -
34 PsiBlast_CBE 68.0033% 21 - C5 -1NE7 - GNPI1_HUMAN -
46 Fugue 67.6332% 36 - C5 -1DEA - NAGB_ECOLI -
33 PsiBlast_CBE 67.5733% 23 - C5 -1NE7 - GNPI1_HUMAN -
31 PsiBlast_CBE 67.4533% 25 - C5 -1NE7 - GNPI1_HUMAN -
14 PsiBlast_PDB 64.2432% 26 - C5 -1FS5 3.4 NAGB_ECOLI